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Table 1 Primers used to amplify RACE products and characterize Rx polymorphism.

From: A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia

Gene

Procedure

Name

Sequence 5' → 3'

hb

5'-RACE

F1

CAGGCGAAGTCGAACTACGTTCACGACATACC

  

F2

CGCAA-TACCCCGATGTGTTCACGAGAGAGG

 

3'-RACE

R1

TCTTGCCTCGCT-CAAGTCCAGCCGAAG

  

R2

GGGCAAGTTCCTCTCTCGTGAACACATCGG

otp

5'-RACE

R1

CGCTGCCAGCTCTTCTCGCATGAACAC

  

R2

CGGA-TAGTGAGTCCTGGCGAAACATCGC

 

3'-RACE

F1

CGAGCGATGTTT-CGCCAGGACTCACTATC

  

F2

CGGATGTGTTCATGCGAGAAGAGCTGG

rx

5'-RACE

R1

TGTACCCTAACTTCAGGGAGGCTTATTTTTAGCG

  

R2

TGGATAGTGGGATTTCTCGAAGGCTCGC

 

3'-RACE

F1

TCAGAAGA-AACCGTACCACCTTCACAACG

  

F2

TCGAGCGAGCCTTCGAGAAATCCC

 

polymorphism

RX_for

GATCCTTAATTCAAACCCTGGGAC

  

RX_rev

TCGGGCAAATCTGA TACGAGTAG

  1. RACE = rapid amplification of cDNA ends.