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Table 1 Mnemiopsis homeobox genes.

From: The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

Name

Domain

Signature

Intron codons

Accession

TALE

    

MlPbx

Pbx

insert(NLA) 23

2,47/48

HM444125

MlMeis

MeisA, MeisD

insert(HLT) 23

25/26, 51

HM444091

MlPknox

Pbx

insert(HLG) 23

25/26, 51

HM444122

POU

    

MlPou1

Pou

  

HM444110

MlPOU26a

Pou

  

HM444092

MlPOU26b

   

HM444093

MlPOU26c

   

HM444094

LIM

    

MlIsl

Lim

 

39

HM444123

MlLhx1.5

Lim

 

55/56

HM444088

MlLhx3.4

Lim

 

27

HM444089

MlLmx

Lim

 

11,55/56

HM444090

SIX

    

MlSIX13a

Six

  

HM444111

MlSIX13b

Six

  

HM444112

MlSIX13c

Six

  

HM444113

MlSIX13d

Six

 

12,58

HM444114

MlSIX13e

Six

  

HM444115

MlSIX13f

Six

  

HM444130

MlSIX27

Six

 

17

HM444128

MlSIX28

Six

  

HM444129

MlSIX32a

   

HM444116

MlSIX32b

Six

  

HM444144

MlSIX32c

Six

 

30

HM444117

MlSIX36

Six

NKL

45

HM444118

MlSIX41

Six

 

9,45

HM444127

MlSIX59a

Six

 

57*

HM444131

MlSIX59b

Six

 

57*

HM444119

MlSIX59c

Six

 

57*

HM444120

MlSIX59d

Six

 

57*

HM444121

MlSIX59e

Six

 

57*

HM444126

ANTP

    

MlANTP03a

 

HOXL2

 

HM444145

MlANTP03b

 

HOXL2

 

HM444132

MlANTP03c

   

HM444134

MlANTP03d

   

HM444072

MlANTP19

 

NKL

21/22

HM444073

MlANTP21

  

10,52

HM444074

MlANTP22

  

13/14

HM444075

MlANTP23

  

18

HM444140

MlANTP25

   

HM444076

MlANTP35

  

44/45

HM444077

MlANTP37

 

NKL, HOXL

44-45

HM444078

MlANTP47

  

46-47

HM444079

MlANTP48

 

NKL, HOXL2

21-22

HM444080

MlANTP51

  

36

HM444136

MlANTP63

  

12/13

HM444137

MlANTP65

  

12/13,45

HM444081*

MlANTP66

  

46/47

HM444082*

MlANTP67

  

17/18,47

HM444083*

MlANTP68

 

NKL

14/15,44/45

HM444084*

MlANTP71

 

NKL

9,53

HM444085

MlANTP72

 

NKL

44/45

HM444086

MlANTP78

  

39

HM444087

PRD

    

MlPRD10a

 

PRD

37

HM444097

MlPRD10b

 

PRD

24,46/47

HM444098*

MlPRD16

Octapeptide

PRD

46/47

HM444102*

MlPRD43

Octapeptide

 

46/47

HM444104

MlPRD44

 

PRD, HOXL2

46/47

HM444105*

MlPRD50

Octapeptide

 

14/15,46/47

HM444141

MlPRD61

Octapeptide

PRD

12/13,46/47

HM444147

Unclassified

    

MlHD01

   

HM444143

MlHD05

   

HM444146

MlHD07a

   

HM444139

MlHD07b

   

HM444095

MlHD07c

   

HM444096

MlHD11a

   

HM444133

MlHD11b

   

HM444099

MlHD14

   

HM444100

MlHD15

   

HM444101

MlHD31

   

HM444103

MlHD60

 

insert(LP) 33

 

HM444135

MlHD70

   

HM444106

MlHD76a

   

HM444107

MlHD76b

   

HM444142

MlHD77a

   

HM444108

MlHD77b

   

HM444138

MlHD79

 

insert(N) 22

 

HM444109

MlHD86

   

HM444124

  1. The first column (Name) contains the names given to each gene. The second column (Domain) indicates any additional domains detected either in the predicted gene sequence or in close genomic proximity to the homeobox in the same orientation. If NKL, HOXL, HOXL2 or PRD sequence signatures or are present in the translated homeodomain (as defined in [40]), this is noted in the third column. The third column (Signature) also includes the amino acid sequences of atypical insertions if they are present. The format for insertions is the word 'insert' followed by the amino acids that make up the insertion in parentheses and the first codon of the homeobox occupied by the insertion. For those homeoboxes that are interrupted by one or more introns, the fourth column (Intron Codons) lists either the codon that is interrupted (noted by a single number) or the two codons that are separated by an intron (noted by two numbers separated by a forward slash). Commas separate codon positions for genes with multiple introns. The five MlSIX59 homeoboxes are truncated at the 57th codon and occur at the end of their corresponding GENSCAN gene prediction. The last column indicates the GenBank accession of the corresponding nucleotide sequences. An asterisk next to an accession indicates a previously described version of this homeodomain exists. The previously described homeodomains are as follows: MlANTP65 - ACD85820 (Tlx-like), MlANTP66 - ACD85819 (Dlx/NK-like), MlANTP67 - ACD85818 (BarH/BarX-like), MlANTP68 - ACD85817 (Bsh), MlPRD10b - ACD85823 (Prd3), MlPRD16 - ACD85821 (Prd1), MlPRD44 - ACD85822 (Prd2).
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