Table 2 Statistics of NGen assembly (mt: mitochondrial DNA)
| Â | Gallus | Crocodylus | Elaphe | Pogona | Trachemys |
|---|---|---|---|---|---|
Contigs generated | 39,723 | 36,088 | 25,819 | 52,348 | 37,498 |
Contigs without mt | 36,809 (92.7%) | 34,013 (94.2%) | 22,983 (89%) | 48,838 (93.3%) | 34,592 (92.2%) |
Singletons | 184,139 | 171,709 | 217,290 | 263,428 | 168,075 |
Singletons without mt | 65,066 (35.3%) | 77,684 (45.2%) | 56,705 (26.1%) | 85,666 (32.5%) | 69,968 (41.6%) |
Total | 223,862 | 207,797 | 243,109 | 315,776 | 205,573 |
Total without mt | 101,875 (46%) | 111,697 (54%) | 79,688 (33%) | 134,504 (43%) | 104,560 (51%) |
Av. contig length | 375 | 415 | 424 | 407 | 360 |
Max contig length | 4,255 | 7,513 | 5,317 | 6,063 | 4,841 |
Cumul. contig length | 15.0 Mb | 15.2 Mb | 10.1 Mb | 21.6 Mb | 13.8 Mb |
Cumul. total length | 48.2 Mb | 39.9 Mb | 53.9 Mb | 69.0 Mb | 37.6 Mb |
Average reads/contig | 9.5 | 9.6 | 13.2 | 11.9 | 11.9 |
Greater than 500 b | 7,080 | 7,796 | 5,206 | 10,709 | 6,081 |
Greater than 1 Kb | 1,570 | 1,805 | 1,269 | 2,792 | 1,386 |
Av. sequencing depth | 3.2 | 2.9 | 3.1 | 3.7 | 3.2 |