TY - JOUR AU - Bertrand, S. AU - Brunet, F. AU - Escriva, H. AU - Parmentier, G. AU - Laudet, V. AU - Robinson-Rechavi, M. PY - 2004 DA - 2004// TI - Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems JO - Molecular Biology and Evolution VL - 21 UR - https://doi.org/10.1093/molbev/msh200 DO - 10.1093/molbev/msh200 ID - Bertrand2004 ER - TY - JOUR AU - Gauchat, D. AU - Escriva, H. AU - Miljkovic-Licina, M. AU - Chera, S. AU - Langlois, M. C. AU - Begue, A. AU - Laudet, V. AU - Galliot, B. PY - 2004 DA - 2004// TI - The orphan COUP-TF nuclear receptors are markers for neurogenesis from cnidarians to vertebrates JO - Developmental Biology VL - 275 UR - https://doi.org/10.1016/j.ydbio.2004.07.037 DO - 10.1016/j.ydbio.2004.07.037 ID - Gauchat2004 ER - TY - JOUR AU - Grasso, L. AU - Hayward, D. AU - Trueman, J. AU - Hardie, K. AU - Janssens, P. AU - Ball, E. PY - 2001 DA - 2001// TI - The evolution of nuclear receptors: evidence from the coral Acropora JO - Molecular Phylogenetics and Evolution VL - 21 UR - https://doi.org/10.1006/mpev.2001.0994 DO - 10.1006/mpev.2001.0994 ID - Grasso2001 ER - TY - JOUR AU - Larroux, C. AU - Fahey, B. AU - Liubicich, D. AU - Hinman, V. AU - Gauthier, M. AU - Gongora, M. AU - Green, K. AU - Wörheide, G. AU - Leys, S. AU - Degnan, B. PY - 2006 DA - 2006// TI - Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity JO - Evolution and Development VL - 8 UR - https://doi.org/10.1111/j.1525-142X.2006.00086.x DO - 10.1111/j.1525-142X.2006.00086.x ID - Larroux2006 ER - TY - JOUR AU - Reitzel, A. M. AU - Tarrant, A. M. PY - 2009 DA - 2009// TI - Nuclear receptor complement of the cnidarian Nematostella vectensis: phylogenetic relationships and developmental expression patterns JO - BMC Evolutionary Biology VL - 9 UR - https://doi.org/10.1186/1471-2148-9-230 DO - 10.1186/1471-2148-9-230 ID - Reitzel2009 ER - TY - JOUR AU - Wiens, M. AU - Batel, R. AU - Korzhev, M. AU - Müller, W. PY - 2003 DA - 2003// TI - Retinoid X receptor and retinoic acid response in the marine sponge Suberites domuncula JO - Journal of Experimental Biology VL - 206 UR - https://doi.org/10.1242/jeb.00541 DO - 10.1242/jeb.00541 ID - Wiens2003 ER - TY - CHAP AU - Phelps, C. AU - Gburcik, V. AU - Suslova, E. AU - Dudek, P. AU - Forafonov, F. AU - Bot, N. AU - MacLean, M. AU - Fagan, R. J. AU - Picard, D. PY - 2006 DA - 2006// BT - Fungi and animals may share a common ancestor to nuclear receptors ID - Phelps2006 ER - TY - JOUR PY - 1999 DA - 1999// TI - A Unified Nomenclature System for the Nuclear Receptor Superfamily JO - Cell VL - 97 UR - https://doi.org/10.1016/S0092-8674(00)80726-6 DO - 10.1016/S0092-8674(00)80726-6 ID - ref8 ER - TY - JOUR AU - Kostrouch, Z. AU - Kostrouchova, M. AU - Love, W. AU - Jannini, E. AU - Piatigorsky, J. AU - Rall, J. PY - 1998 DA - 1998// TI - Retinoic acid X receptor in the diploblast, Tripedalia cystophora JO - Proceedings of the National Academy of Science, USA VL - 95 UR - https://doi.org/10.1073/pnas.95.23.13442 DO - 10.1073/pnas.95.23.13442 ID - Kostrouch1998 ER - TY - JOUR AU - Bridgham, J. T. AU - Eick, G. N. AU - Larroux, C. AU - Deshpande, K. AU - Harms, M. J. AU - Gauthier, M. E. AU - Ortlund, E. A. AU - Degnan, B. M. AU - Thornton, J. W. PY - 2010 DA - 2010// TI - Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor JO - PLOS Biology VL - 8 UR - https://doi.org/10.1371/journal.pbio.1000497 DO - 10.1371/journal.pbio.1000497 ID - Bridgham2010 ER - TY - JOUR AU - Srivastava, M. AU - Begovic, E. AU - Chapman, J. AU - Putnam, N. H. AU - Hellsten, U. AU - Kawashima, T. AU - Kuo, A. AU - Mitros, T. AU - Salamov, A. AU - Carpenter, M. L. AU - Signorovitch, A. Y. AU - Moreno, M. A. AU - Kamm, K. AU - Grimwood, J. AU - Schmutz, J. AU - Shapiro, H. AU - Grigoriev, I. V. AU - Buss, L. W. AU - Schierwater, B. AU - Dellaporta, S. L. AU - Rokhsar, D. S. PY - 2008 DA - 2008// TI - The Trichoplax genome and the nature of placozoans JO - Nature VL - 454 UR - https://doi.org/10.1038/nature07191 DO - 10.1038/nature07191 ID - Srivastava2008 ER - TY - JOUR AU - Baker, M. E. PY - 2008 DA - 2008// TI - Trichoplax, the simplest known animal, contains an estrogen-related receptor but no estrogen receptor: Implications for estrogen receptor evolution JO - Biochemical and Biophysical Research Communications VL - 375 UR - https://doi.org/10.1016/j.bbrc.2008.08.047 DO - 10.1016/j.bbrc.2008.08.047 ID - Baker2008 ER - TY - JOUR AU - Hejnol, A. AU - Obst, M. AU - Stamatakis, A. AU - Ott, M. AU - Rouse, G. W. AU - Edgecombe, G. D. AU - Martinez, P. AU - Baguna, J. AU - Bailly, X. AU - Jondelius, U. AU - Wiens, M. AU - Müller, W. E. AU - Seaver, E. AU - Wheeler, W. C. AU - Martindale, M. Q. AU - Giribet, G. AU - Dunn, C. W. PY - 2009 DA - 2009// TI - Assessing the root of bilaterian animals with scalable phylogenomic methods JO - Proceedings of the Royal Society B: Biological Sciences VL - 276 UR - https://doi.org/10.1098/rspb.2009.0896 DO - 10.1098/rspb.2009.0896 ID - Hejnol2009 ER - TY - JOUR AU - Dunn, C. W. AU - Hejnol, A. AU - Matus, D. Q. AU - Pang, K. AU - Browne, W. E. AU - Smith, S. A. AU - Seaver, E. AU - Rouse, G. W. AU - Obst, M. AU - Edgecombe, G. D. AU - Sørensen, M. V. AU - Haddock, S. H. AU - Schmidt-Rhaesa, A. AU - Okusu, A. AU - Kristensen, R. M. AU - Wheeler, W. C. AU - Martindale, M. Q. AU - Giribet, G. PY - 2008 DA - 2008// TI - Broad phylogenomic sampling improves resolution of the animal tree of life JO - Nature VL - 452 UR - https://doi.org/10.1038/nature06614 DO - 10.1038/nature06614 ID - Dunn2008 ER - TY - JOUR AU - Schierwater, B. AU - Eitel, M. AU - Jakob, W. AU - Osigus, H. AU - Hadrys, H. AU - Dellaporta, S. L. AU - Kolokotronis, S. O. AU - DeSalle, R. PY - 2009 DA - 2009// TI - Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoan" hypothesis JO - PLoS Biology VL - 7 UR - https://doi.org/10.1371/journal.pbio.1000020 DO - 10.1371/journal.pbio.1000020 ID - Schierwater2009 ER - TY - JOUR AU - Philippe, H. AU - Derelle, R. AU - Lopez, P. AU - Pick, K. AU - Borchiellini, C. AU - Boury-Esnault, N. AU - Vacelet, J. AU - Renard, E. AU - Houliston, E. AU - Quéinnec, E. AU - Da Silva, C. AU - Wincker, P. AU - Le Guyader, H. AU - Leys, S. AU - Jackson, D. J. AU - Schreiber, F. AU - Erpenbeck, D. AU - Morgenstern, B. AU - Wörheide, G. AU - Manuel, M. PY - 2009 DA - 2009// TI - Phylogenomics revives traditional views on deep animal relationships JO - Current Biology VL - 19 UR - https://doi.org/10.1016/j.cub.2009.02.052 DO - 10.1016/j.cub.2009.02.052 ID - Philippe2009 ER - TY - JOUR AU - Peterson, K. J. AU - Eernisse, D. J. PY - 2001 DA - 2001// TI - Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences JO - Evolution & Development VL - 3 UR - https://doi.org/10.1046/j.1525-142x.2001.003003170.x DO - 10.1046/j.1525-142x.2001.003003170.x ID - Peterson2001 ER - TY - JOUR AU - Pick, K. S. AU - Philippe, H. AU - Schreiber, F. AU - Erpenbeck, D. AU - Jackson, D. J. AU - Wrede, P. AU - Wiens, M. AU - Alie, A. AU - Morgenstern, B. AU - Manuel, M. AU - Wörheide, G. PY - 2010 DA - 2010// TI - Improved phylogenomic taxon sampling noticeably affects non-bilaterian relationships JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msq089 DO - 10.1093/molbev/msq089 ID - Pick2010 ER - TY - JOUR AU - Wallberg, A. AU - Thollesson, M. AU - Farris, J. S. AU - Jondelius, U. PY - 2004 DA - 2004// TI - The phylogenetic position of the comb jellies (Ctenophora) and the importance of taxonomic sampling JO - Cladistics VL - 20 UR - https://doi.org/10.1111/j.1096-0031.2004.00041.x DO - 10.1111/j.1096-0031.2004.00041.x ID - Wallberg2004 ER - TY - JOUR AU - Podar, M. AU - Haddock, S. H. D. AU - Sogin, M. L. AU - Harbison, G. R. PY - 2001 DA - 2001// TI - A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes JO - Molecular Phylogenetics and Evolution VL - 21 UR - https://doi.org/10.1006/mpev.2001.1036 DO - 10.1006/mpev.2001.1036 ID - Podar2001 ER - TY - JOUR AU - Ryan, J. F. AU - Pang, K. AU - Program, N. C. S. AU - Mullikin, J. C. AU - Martindale, M. Q. AU - Baxevanis, A. D. PY - 2010 DA - 2010// TI - The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa JO - EvoDevo VL - 1 UR - https://doi.org/10.1186/2041-9139-1-9 DO - 10.1186/2041-9139-1-9 ID - Ryan2010 ER - TY - JOUR AU - Pang, K. AU - Martindale, M. Q. PY - 2008 DA - 2008// TI - Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi JO - Development Genes and Evolution VL - 218 UR - https://doi.org/10.1007/s00427-008-0222-3 DO - 10.1007/s00427-008-0222-3 ID - Pang2008 ER - TY - JOUR AU - Meyer, E. AU - Aglyamova, G. AU - Wang, S. AU - Buchanan-Carter, J. AU - Abrego, D. AU - Colbourne, J. AU - Willis, B. AU - Matz, M. PY - 2009 DA - 2009// TI - Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-219 DO - 10.1186/1471-2164-10-219 ID - Meyer2009 ER - TY - JOUR AU - Edgar, R. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Research VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Stamatakis, A. PY - 2006 DA - 2006// TI - RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl446 DO - 10.1093/bioinformatics/btl446 ID - Stamatakis2006 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Ronquist, F. PY - 2001 DA - 2001// TI - MRBAYES: Bayesian inference of phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.8.754 DO - 10.1093/bioinformatics/17.8.754 ID - Huelsenbeck2001 ER - TY - JOUR AU - Thornton, J. W. PY - 2003 DA - 2003// TI - Nuclear receptor diversity: phylogeny, evolution and endocrine disruption JO - Pure and Applied Chemistry VL - 75 UR - https://doi.org/10.1351/pac200375111827 DO - 10.1351/pac200375111827 ID - Thornton2003 ER - TY - JOUR AU - Laudet, V. PY - 1997 DA - 1997// TI - Early diversification of the nuclear receptor superfamily: early diversification from an ancestral orphan receptor JO - Journal of Molecular Endocrinology VL - 19 UR - https://doi.org/10.1677/jme.0.0190207 DO - 10.1677/jme.0.0190207 ID - Laudet1997 ER - TY - JOUR AU - Tarrant, A. M. AU - Cortes, J. AU - Atkinson, M. AU - Atkinson, S. AU - Johanning, K. AU - Chiang, T. c. AU - Vargas, J. A. AU - McLachlan, J. A. PY - 2008 DA - 2008// TI - Three orphan nuclear receptors in the scleractinian coral Pocillopora damicornis from the Pacific coast of Costa Rica JO - Rev Biol Trop VL - 56 ID - Tarrant2008 ER - TY - JOUR AU - Chapman, J. A. AU - Kirkness, E. F. AU - Simakov, O. AU - Hampson, S. E. AU - Mitros, T. AU - Weinmaier, T. AU - Rattei, T. AU - Balasubramanian, P. G. AU - Borman, J. AU - Busam, D. PY - 2010 DA - 2010// TI - The dynamic genome of Hydra JO - Nature VL - 464 UR - https://doi.org/10.1038/nature08830 DO - 10.1038/nature08830 ID - Chapman2010 ER - TY - JOUR AU - Escriva, H. AU - Safi, R. AU - Hanni, C. AU - Langlois, M. C. AU - Saumitou-Laprade, P. AU - Stehelin, D. AU - Capron, A. AU - Pierce, R. AU - Laudet, V. PY - 1997 DA - 1997// TI - Ligand binding was acquired during the evolution of nuclear receptors JO - Proceedings of the National Academy of Science, USA VL - 94 UR - https://doi.org/10.1073/pnas.94.13.6803 DO - 10.1073/pnas.94.13.6803 ID - Escriva1997 ER - TY - JOUR AU - Brosius, J. PY - 2003 DA - 2003// TI - The contribution of RNAs and retroposition to evolutionary novelties JO - Genetica VL - 118 UR - https://doi.org/10.1023/A:1024141306559 DO - 10.1023/A:1024141306559 ID - Brosius2003 ER - TY - JOUR AU - Wu, W. AU - Niles, E. G. AU - Hirai, H. AU - LoVerde, P. T. PY - 2007 DA - 2007// TI - Evolution of a novel subfamily of nuclear receptors with members that each contain two DNA binding domains JO - BMC Evolutionary Biology VL - 7 UR - https://doi.org/10.1186/1471-2148-7-27 DO - 10.1186/1471-2148-7-27 ID - Wu2007 ER - TY - JOUR AU - Giguere, V. PY - 1999 DA - 1999// TI - Orphan nuclear receptors: from gene to function JO - Endocrine Reviews VL - 20 ID - Giguere1999 ER - TY - JOUR AU - Park, Y. Y. AU - Teyssier, C. AU - Vanacker, J. M. AU - Choi, H. S. PY - 2007 DA - 2007// TI - Distinct repressive properties of the mammalian and fish orphan nuclear receptors SHP and DAX-1 JO - Molecules and Cells VL - 23 ID - Park2007 ER - TY - JOUR AU - Nauber, U. AU - Pankratz, M. J. AU - Kienlin, A. AU - Seifert, E. AU - Klemm, U. AU - Jackle, H. PY - 1988 DA - 1988// TI - Abdominal segmentation of the Drosophila embryo requires a hormone receptor-like protein encoded by the gap gene knirps JO - Nature VL - 336 UR - https://doi.org/10.1038/336489a0 DO - 10.1038/336489a0 ID - Nauber1988 ER - TY - JOUR AU - Sluder, A. AU - Matthews, S. AU - Hough, D. AU - Yin, V. AU - Maina, C. PY - 1999 DA - 1999// TI - The nuclear receptor superfamily has undergone extensive proliferation and diversification in nematodes JO - Genome Research VL - 9 ID - Sluder1999 ER - TY - JOUR AU - Näär, A. M. AU - Thakur, J. K. PY - 2009 DA - 2009// TI - Nuclear receptor-like transcription factors in fungi JO - Genes & Development VL - 23 UR - https://doi.org/10.1101/gad.1743009 DO - 10.1101/gad.1743009 ID - Näär2009 ER - TY - JOUR AU - Khorasanizadeh, S. AU - Rastinjad, F. PY - 2001 DA - 2001// TI - Nuclear-receptor interactions on DNA-response elements JO - Trends Biochem Sci VL - 26 UR - https://doi.org/10.1016/S0968-0004(01)01800-X DO - 10.1016/S0968-0004(01)01800-X ID - Khorasanizadeh2001 ER - TY - JOUR AU - Zazopoulos, E. AU - Lalli, E. AU - Stocco, D. M. AU - Sassone-Corsi, P. PY - 1997 DA - 1997// TI - DNA binding and transcriptional repression by DAX-1 blocks steroidogenesis JO - Nature VL - 390 UR - https://doi.org/10.1038/36899 DO - 10.1038/36899 ID - Zazopoulos1997 ER - TY - JOUR AU - Crawford, P. A. AU - Dorn, C. AU - Sadovsky, Y. AU - Milbrandt, J. PY - 1998 DA - 1998// TI - Nuclear receptor DAX-1 recruits nuclear receptor corepressor N-CoR to steroidogenic factor 1 JO - Molecular and Cellular Biology VL - 18 UR - https://doi.org/10.1128/MCB.18.5.2949 DO - 10.1128/MCB.18.5.2949 ID - Crawford1998 ER - TY - JOUR AU - Song, K. H. AU - Park, Y. Y. AU - Park, K. C. AU - Hong, C. Y. AU - Park, J. H. AU - Shong, M. AU - Lee, K. AU - Choi, H. S. PY - 2004 DA - 2004// TI - The atypical orphan nuclear receptor DAX-1 interacts with orphan nuclear receptor Nur77 and represses its transactivation JO - Molecular Endocrinology VL - 18 UR - https://doi.org/10.1210/me.2004-0043 DO - 10.1210/me.2004-0043 ID - Song2004 ER - TY - JOUR AU - Masuda, N. AU - Yasumo, H. AU - Tamura, T. AU - Hashiguchi, N. AU - Furusawa, T. AU - Tsukamoto, T. AU - Sadano, H. AU - Osumi, T. PY - 1997 DA - 1997// TI - An orphan nuclear receptor lacking a zinc-finger DNA-binding domain: interaction with several nuclear receptors JO - Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression VL - 1350 UR - https://doi.org/10.1016/S0167-4781(96)00196-0 DO - 10.1016/S0167-4781(96)00196-0 ID - Masuda1997 ER - TY - JOUR AU - Laudet, V. AU - Hanni, V. AU - Coll, J. AU - Catzeflis, F. AU - Stehelin, D. PY - 1992 DA - 1992// TI - Evolution of the nuclear receptor gene superfamily JO - The EMBO Journal VL - 11 ID - Laudet1992 ER - TY - JOUR AU - Collins, A. G. PY - 1998 DA - 1998// TI - Evaluating multiple alternative hypotheses for the origin of Bilateria: An analysis of 18S rRNA molecular evidence JO - Proceedings of the National Academy of Sciences of the United States of America VL - 95 UR - https://doi.org/10.1073/pnas.95.26.15458 DO - 10.1073/pnas.95.26.15458 ID - Collins1998 ER - TY - JOUR AU - Ruiz-Trillo, I. AU - Riutort, M. AU - Littlewood, D. T. J. AU - Herniou, E. A. AU - Baguñà, J. PY - 1999 DA - 1999// TI - Acoel flatworms: earliest extant bilaterian metazoans, not members of platyhelminthes JO - Science VL - 283 UR - https://doi.org/10.1126/science.283.5409.1919 DO - 10.1126/science.283.5409.1919 ID - Ruiz-Trillo1999 ER - TY - JOUR AU - Hejnol, A. AU - Martindale, M. PY - 2009 DA - 2009// TI - Coordinated spatial and temporal expression of Hox genes during embryogenesis in the acoel Convolutriloba longifissura JO - BMC Biology VL - 7 UR - https://doi.org/10.1186/1741-7007-7-65 DO - 10.1186/1741-7007-7-65 ID - Hejnol2009 ER - TY - JOUR AU - Cook, C. E. AU - Jiménez, E. AU - Akam, M. AU - Saló, E. PY - 2004 DA - 2004// TI - The Hox gene complement of acoel flatworms, a basal bilaterian clade JO - Evolution & Development VL - 6 UR - https://doi.org/10.1111/j.1525-142X.2004.04020.x DO - 10.1111/j.1525-142X.2004.04020.x ID - Cook2004 ER - TY - JOUR AU - Larroux, C. AU - Luke, G. N. AU - Koopman, P. AU - Rokhsar, D. S. AU - Shimeld, S. M. AU - Degnan, B. M. PY - 2008 DA - 2008// TI - Genesis and expansion of metazoan transcription factor gene classes JO - Molecular Biology and Evolution VL - 25 UR - https://doi.org/10.1093/molbev/msn047 DO - 10.1093/molbev/msn047 ID - Larroux2008 ER - TY - JOUR AU - Wu, W. AU - Niles, E. AU - LoVerde, P. PY - 2007 DA - 2007// TI - Thyroid hormone receptor orthologues from invertebrate species with emphasis on Schistosoma mansoni JO - BMC Evolutionary Biology VL - 7 UR - https://doi.org/10.1186/1471-2148-7-150 DO - 10.1186/1471-2148-7-150 ID - Wu2007 ER - TY - JOUR AU - Keay, J. AU - Bridgham, J. T. AU - Thornton, J. W. PY - 2006 DA - 2006// TI - The Octopus vulgaris estrogen receptor is a constitutive transcriptional activator: evolutionary and functional implications JO - Endocrinology VL - 147 UR - https://doi.org/10.1210/en.2006-0363 DO - 10.1210/en.2006-0363 ID - Keay2006 ER - TY - JOUR AU - Keay, J. AU - Thornton, J. W. PY - 2009 DA - 2009// TI - Hormone-activated estrogen receptors in annelid invertebrates: Implications for evolution and endocrine disruption JO - Endocrinology VL - 150 UR - https://doi.org/10.1210/en.2008-1338 DO - 10.1210/en.2008-1338 ID - Keay2009 ER -