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Table 3 Comparison of Ophiocoma wendtii gastrula transcripts to the Strongylocentrotus purpuratus ectodermal gene regulatory network

From: Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii

Gene

Found inO.w. gastrula

RBB toS.p. Genome [SpBase:]

RBB to NCBI RefSeq Proteins [NCBI:]

Role in S.p.

Nodal

N

  

Oral ectoderm

Lefty

N

  

Oral ectoderm

Chordin

Y

Chordin

S.k. Chordin

Oral ectoderm

  

[SPU_004983]

[NP_001158390.1]

 

Sip1

N

  

Oral ectoderm

FoxG

N

  

Oral ectoderm

BMP2/4

Y

BMP2/4

S.p. BMP2/4

Oral ectoderm

  

[SPU_000669]

[NP_001116977.1]

 

FoxA

Y

FoxA

S.p. FoxA

Oral ectoderm

  

[SPU_006676]

[NP_001073010.1]

 

Bra

N

  

Oral ectoderm

Dri

Y

Dri

S.p. Dri

Oral ectoderm

  

[SPU_017106]

[NP_999799.1]

 

Hes

Y

Hes

S.k. Hes1

Oral ectoderm

  

[SPU_006814]

[NP_001158466.1]

 

Hnf6

Y

Hnf6

S.p. Hnf6

Oral ectoderm

  

[SPU_016449]

[NP_999824.1]

 

FoxJ1

Y

FoxJ1

S.p. FoxJ1

Ecto/Endo border

  

[SPU_027969]

[NP_001073013.1]

 

Nk1

N

  

Ecto/Endo border

Lim1

N

  

Ecto/Endo border

Tbx2/3

Y

Tbx2/3

S.p. Tbx2/3

Aboral ectoderm

  

[SPU_023386]

[NP_001123280.1]

 

Lhx2 (Lim2)

Y

Lhx2

M.m. Lhx2

Aboral ectoderm

  

[SPU_021313]

[NP_034840.1]

 

Dlx

N

  

Aboral ectoderm

Nk2.2

Y

Nk2.2

S.p. Nk2.2

Aboral ectoderm

  

[SPU_000756]

[NP_001123283.1]

 

Hox7

N

  

Aboral ectoderm

Msx

N

  

Aboral ectoderm

Klf7

Y

Klf2/4

S.k. Klf2

Aboral ectoderm

  

[SPU_020311]

[NP_001161575.1]

 

IrxA

N

  

Aboral ectoderm

Hmx

N

  

Aboral ectoderm

  1. M.m. = Mus musculus, O.w. = Ophiocoma wendtii, S.k. = Saccoglossus kowalevskii, S.p. = Strongylocentrotus purpuratus.