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Table 2 Quality control read attrition

From: A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems

Timepoint

Raw paired end reads

QC step 1

%

QC step 2

%

0 h

1.74E + 07

1.29E + 07

74.29

1.24E + 07

71.38

6 h

1.98E + 07

1.46E + 07

73.76

1.40E + 07

70.95

12 h

1.44E + 07

9.17E + 06

63.48

8.76E + 06

60.68

18 h

2.88E + 07

1.96E + 07

68.25

1.89E + 07

65.65

24 h-A

3.61E + 07

2.57E + 07

71.05

2.46E + 07

68.22

24 h-B

2.75E + 06

1.87E + 06

67.99

1.77E + 06

64.31

Total

1.19E + 08

8.39E + 07

70.31

8.05E + 07

67.51

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