Skip to main content

Table 1 Classification of Sox genes from this study

From: Expression of multiple Sox genes through embryonic development in the ctenophore Mnemiopsis leidyi is spatially restricted to zones of cell proliferation

 

Bilaterian animal

Non-bilaterian animals

Unicellular filozoans

Deuterostomia

Cnidaria

Placozoa

Porifera

Ctenophora

Choanoflagellata

Sox group

Homo sapiens

Nematostella

Acropora

Hydra

Clytia

Trichoplax

Amphimedon

Sycon

Mnemiopsis

Pleurobrachia

Monosiga

Salpingoeca

B group

HsaSry

NveSox1*

AmiSoxB1*

HmaSoxB1

CheSox3*

TadSox1c

AquSoxB1

SciSoxB*

MleSox1*

PpiSox3*d

  

HsaSox1

NveSox2*

AmiSoxBa*

HmaSox10

CheSox10*

TadSox2

AquSoxB2

PpiSox5a

HsaSox2

NveSoxB1*

PpiSox7a

HsaSox3

NveSoxB2*

PpiSox9a

HsaSox14

PpiSox10a

HsaSox15

PpiSox11a

HsaSox21

HsaSox30c

C group

HsaSox4

NveSox5*

AmiSoxC*

HmaSox4

CheSox12*

TadSox4

AquSoxC

SciSoxC*

MleSox2*

PpiSox2*d

  

HsaSox11

PpiSox12*d

HsaSox12

PpiSox13a

D group

HsaSox5

           

HsaSox6

HsaSox13

E group

HsaSox8

NveSoxE1*

AmiSoxE1*

HmaSox5

CheSox1*d

TadSox3

 

SciSox6 c

MleSox3*

PpiSox1*

  

HsaSox9

NveSox6

CheSox5*

SciSoxE*c

MleSox4*

PpiSox6*

HsaSox10

F group

HsaSox7

NveSoxF1*

AmiSoxF*

HmaSox6

CheSox11*

   

MleSox5

PpiSox8*

  

HsaSox17

NveSox7

HmaSox7

HsaSox18

HmaSox8

HmaSox9

HmaSox11

Unclassified

 

NveSoxA

AmiSoxBb*

HmaSox1

CheSox2*c

 

AquSoxF

SciSox7*

MleSox6*

PpiSox4

MbrSox-like1b

SroSox-like1b

NveSox3*

HmaSox2

CheSox13*

SciSoxF1*

MleHMG-boxb

MbrSox-like2b

SroSry-like1b

NveSox4

HmaSox3c

CheSox14*

SciSoxF2*

NveSox8

HmaSox12

NveSox10

HmaSoxBb

CheSox15*

NveSoxJ

Total # Sox genes/groups

20/5

15/4

6/4

14/4

10/4

4/3

4/2

7/3

6/4

13/4

0/0

0/0

  1. An asterisk denotes genes with published in situ expression patterns. Gene names in bold text were previously classified differently [12, 35].
  2. a Not represented in trees because only short partial sequence is available (20 aa missing from HMG-box).
  3. b Not represented in final trees or counted in the total as preliminary analyses indicated that these are not likely to be true Sox family genes.
  4. c Classification sensitive to tree search method used in this study, with classification from ML analysis shown.
  5. d Partial sequence (11 aa missing from 5′ end of HMG-box).