Table 2 Sequence differences in conserved regions (identified in Figure 2 B) between Texas surface fish (SF) and Pachón cavefish (CF)
Conserved sequence | Difference in SF and CF | |
|---|---|---|
1 | CCCTATAGATCATTTAAAAATCAATTGTTAATTATTGTACTTTTGTCTTTCTATCTTTCTCCCTCT | None |
2 | GCTGCCCTCTGTTTGCCGTGGCCCTGGGCTCTCTGGGCTGG | None |
3 | TAAGCCTCTCCAGCGGGCTGCGCAAAAGCCCACAGGGATTACCTTAATGCTGGCCTGCATGTGCCAGAGGGGAAGTCATCGGATGCAGGATCAGGG | None |
4 | GGTCTGGTTTGTTTTGGCAGAAGATCACTTTCCGGCGGTAGCAGCAGCTGGCAATCGTGCCACTGCCTGAAGCCGTTCAGGGCCAGACTGTCGTCCGCAGGTCAACTGTTCTGCTGACGCTGGTGTTCCCACCATGAGCTAATGCCATTCCAGAAAGATCCCCATGTAAGCCCCTCTTTCTGCCACACAGATATAAAGGCTGGAGGTGGCCAGGGCAGAAGGTAGCACACACCGTCTGCGGATCCCT | None |
5 | CAGTCATTATGGATATTGCCATCCAGCACCCCTGGTTCCGACGTGCCCTGGGCTATCCATCCCGCCTCTTTGACCAGTTCTTCGGGGAGGGCCTGTTTGACTATGACCTCTTCCCCTACGCCACCTCCACCGTCAGCCCTTATTATCGGTACTCGCTCTTCCGCAACTTCCTGGATTCCTCCAACTCGGGCATGTCTGAGGTAAACAG | Exon1 “AGC” to “AAC” |
6 | TTTCCTTTGGTTCTTCCCTAGGTGAGGTCTGACAGAGACAAGTTCATGGTCTACCTGGATGTGAAGCACTTCTCCCCCGAGGAACTCAATGTAAAGGTGGCAGAAGACTACGTGGAGATCCAAGGCAAGCATGGGGAGAGACAGGT | Exon2 None |
7 | AGGATGACCATGGCTACATCTCCCGCGAGTTCCACCGCCGCTACCGCCTGCCCTCCAACGTGGACCAGTCGGCCATCACCTGCACCCTGTCGGCCGATGGTCTGCTCACCATCTGTGGGCCCAAGTCAGGCGGCTCAGAGAGCGGCCGTGGAGACCGCAGCATTCCTGTCACCCGTGACGACAAGACTAACTCTACCCCCTcCTCTTAGGCCGCCTCAT | Exon3 None |
8 | CCTGTCCTGTAGCCTCTAGTTCTACTTATA | None |
9 | CACCTTTGCTAGTTTGCTAAAAAGAAATTAA | None |
10 | CCATCTCAACTCAAGGCTGAAGTCAAACCT | None |