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Table 2 Summary of topologies and nodes supports obtained with the Hes superfamily partial dataset analyses

From: History of a prolific family: the Hes/Hey-related genes of the annelid Platynereis

Node

names

Node descriptions

Partial dataset

Comments

ML - aLRT

ML - bootstrap

Bayes - PP

ML - aLRT

ML - bootstrap

Bayes - PP

A

Hes + Dec + Hey + Stich + Helt

0,99

96

1

2 sequences are not included in any family :

2 sequences are not included in any family :

Oca_10158 is included in

     

sko_273877 and Bfl_109346

sko_273877 and Bfl_109346

no family

B

Hes

0,89

32

0,97

   

C

Hey

0,86

44

0,97

  

sko_273877 and Bfl_109346

       

are included in Hey

D

Helt

0,72

28

0,95

  

Oca_10158 is outside Helt

E

Stich

1

96

0,99

   

F

DEC

0,87

60

0,92

   

G

E(Spl)

0,8

4

0,8

Dme-M8 and Dme_M5 are not included

Dme-M8 and Dme_M5 are not included

Dme-M8 and Dme_M5 are included

H

Cnidarian Hes

0,69

55

0,69

8 sequences

8 sequences

8 sequences

I

Lophotrochozoan Hes group 1

0,9

1

_

13 sequences

13 sequences

Not found

J

Lophotrochozoan Hes group 2

0,92

6

0,78

6 sequences + Spu-15712

6 sequences + Spu-15712

5 sequences + Spu-15712

K

Ecdysozoan Hes group 1

0,93

1

_

12 sequences including Dme_Hairy, side and dpn

12 sequences including Dme_Hairy, side and dpn

Not found

L

Deuterostomian Hes group 1

0,97

58

0,98

4 sequences of Danio and Homo

4 sequences of Danio and Homo

4 sequences of Danio and Homo

M

Hes subgroup

0,91

0

_

48 sequences including Lophotrochozoan Hes

48 sequences including Lophotrochozoan Hes

Not found

     

groups 1 and 2, Ecdysozoan Hes group 1,

groups 1 and 2, Ecdysozoan Hes group 1,

 
     

Cnidarian Hes and Deuterostomian Hes group 1

Cnidarian Hes and Deuterostomian Hes group 1

 

R

Hes subgroup 2

0,76

1

_

39 sequences including E(spl)

39 sequences including E(spl)

Not found

  1. Hes/Hey-related genes partial dataset was analyzed both with maximum likelihood (ML) and Bayesian algorithms. Node supports were tested by approximate likelihood ratio test (aLRT) (0 to 1) and bootstraps (0 to 100) for ML, and with posterior probabilities (PP, 0-1) for Bayes; results were provided in this table. Node names and descriptions correspond to the nodes of Figure 3. Comments on clade for all analyses are provided, when relevant.
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