Fig. 4
Alignment of amino acid sequences of bilaterian ParaHox and Hox gene orthologs. The Gsx amino acid sequences of Idiosepius notoides and Antalis entalis (red-labeled) cluster with their bilaterian orthologs. Molluscan Gsx orthologs are labeled in red and annelid orthologs in blue. GenBank or JGI accession numbers of amino acid sequences used for the alignment and the phylogenetic tree: Pmi-Xlox (Patiria miniata) AGK89734.1; Bfl-Xlox (Branchiostoma floridae) AAC39016.1; Pdu-Xlox (P. dumerilii) ACH87541.1; Gva-Xlox (G. varia) ADJ18240.1; Lgi-Xlox (Lottia gigantea) JGI e_gw1.80.260.1; Ino-Gsx (I. notoides) KT380894; Lgi-Gsx (L. gigantea) JGI e_gw1.30.54.1; Aen-Gsx (A. entalis) KT380895; Pdu-Gsx (P. dumerilii) ACH87538.1; Gva-Gsx (G. varia) KT380896; Pmi-Gsx (P. miniata) AGK89736.1; Dme-Ind (intermediate neuroblasts defective, D. melanogaster) AAC97116.1; Tca-Ind (intermediate neuroblasts defective, Tribolium castaneum) NP_001034494.1; Bfl-Gsx (Branchiostoma floridae) AAC39015.1; Pdu-Cdx (P. dumerilii) ABA29777.3; Dme-Cdx (D. melanogaster) AAF53923.1; Pmi-Cdx (P. miniata) AGK89735.1; Bfl-Cdx (B. floridae) AAC39017.1; Tca-Cdx (T. castaneum) NP_001034498.1; Gva-Cdx (G. varia) ADJ18241.1; Lgi-Cdx (L.gigantea) JGI estExt_Genewise1.C_sca_850005; Pdu-Hox1 (P. dumerilii) AFJ91921.1; Bla-Hox1 (B. lanceolatum) ACJ74382.1. Pdu-Lox5 (P. dumerilii) AFJ91925.1; Pdu-Post2 (P. dumerilii) AFJ91927.1