Skip to main content

Table 3 Mitochondrial genes of A. limnaeus and D. rerio and their expression summary in the 1–2 cell stage transcriptome

From: Transcriptomic analysis of maternally provisioned cues for phenotypic plasticity in the annual killifish, Austrofundulus limnaeus

Gene code Gene name A. limnaeus D. rerio D.r./A.l.
Rank FPKM Rank FPKM Fold difference
mt-co1 Cytochrome c oxidase subunit 1 1 8491 4 7127 0.8
mt-co3 Cytochrome c oxidase subunit 3 5 5017 7 6417 1.3
mt-atp6 ATP synthase subunit a 16 3270 3 9270 2.8
mt-co2 Cytochrome c oxidase subunit 2 26 2436 5 6798 2.8
mt-nd4 NADH-ubiquinone oxidoreductase chain 4 28 2309 26 1916 0.8
mt-nd2 NADH-ubiquinone oxidoreductase chain 2 39 1738 16 2924 1.7
mt-nd1 NADH-ubiquinone oxidoreductase chain 1 48 1419 12 3208 2.3
mt-cyb Cytochrome b 63 1057 14 2991 2.8
mt-nd4 l NADH-ubiquinone oxidoreductase chain 4L 93 755 126 501 0.7
mt-nd6 NADH-ubiquinone oxidoreductase chain 6 100 714 21 2373 3.3
mt-nd5 NADH-ubiquinone oxidoreductase chain 5 105 688 47 1197 1.7
mt-nd3 NADH-ubiquinone oxidoreductase chain 3 106 674 17 2858 4.2
mt-atp8 ATP synthase protein 8 633 149 89 684 4.6
  1. Rank—rank order of abundance in the transcriptome
  2. FPKM—fragments per kilobase of transcript per million mapped reads
  3. Fold difference—expression value in D. rerio divided by the expression value in A. limnaeus