Transcriptomic analysis of maternally provisioned cues for phenotypic plasticity in the annual killifish, Austrofundulus limnaeus

Table 3 Mitochondrial genes of A. limnaeus and D. rerio and their expression summary in the 1–2 cell stage transcriptome

Gene code	Gene name	A. limnaeus		D. rerio		D.r./A.l.
Gene code	Gene name	Rank	FPKM	Rank	FPKM	Fold difference
mt-co1	Cytochrome c oxidase subunit 1	1	8491	4	7127	0.8
mt-co3	Cytochrome c oxidase subunit 3	5	5017	7	6417	1.3
mt-atp6	ATP synthase subunit a	16	3270	3	9270	2.8
mt-co2	Cytochrome c oxidase subunit 2	26	2436	5	6798	2.8
mt-nd4	NADH-ubiquinone oxidoreductase chain 4	28	2309	26	1916	0.8
mt-nd2	NADH-ubiquinone oxidoreductase chain 2	39	1738	16	2924	1.7
mt-nd1	NADH-ubiquinone oxidoreductase chain 1	48	1419	12	3208	2.3
mt-cyb	Cytochrome b	63	1057	14	2991	2.8
mt-nd4 l	NADH-ubiquinone oxidoreductase chain 4L	93	755	126	501	0.7
mt-nd6	NADH-ubiquinone oxidoreductase chain 6	100	714	21	2373	3.3
mt-nd5	NADH-ubiquinone oxidoreductase chain 5	105	688	47	1197	1.7
mt-nd3	NADH-ubiquinone oxidoreductase chain 3	106	674	17	2858	4.2
mt-atp8	ATP synthase protein 8	633	149	89	684	4.6

Rank—rank order of abundance in the transcriptome
FPKM—fragments per kilobase of transcript per million mapped reads
Fold difference—expression value in D. rerio divided by the expression value in A. limnaeus

ISSN: 2041-9139