Table 4 Top 20 most abundantly expressed small RNA transcripts expressed across all libraries in 1–2 cell stage embryos of A. limnaeus
Sequence | Lengtha | Mean expressionb | Rfam ID | Class of RNA |
|---|---|---|---|---|
TCAGACAACTCTTAGC | 16 | 168,769 | RF02179 | Antisense RNA |
CTCAGACAACTCTTAGC | 17 | 79,972 | RF02179 | Antisense RNA |
GTCGCCTGAATACCGCAGCTAGGAAT | 26 | 43,648 | Not annotated | |
GAGCGCCGCGACTCCTCA | 18 | 12,557 | Not annotated | |
GAGCGCTGCGACTCCTCA | 18 | 10,491 | Not annotated | |
TCTCAGACAACTCTTAGC | 18 | 9808 | Not annotated | |
ACGAGAGCTTTGAAGACCGA | 20 | 7987 | Not annotated | |
AACGAGAGCTTTGAAGACCGA | 21 | 6983 | Not annotated | |
CGAGAGCTTTGAAGACCGA | 19 | 6119 | Not annotated | |
CAGACAACTCTTAGC | 15 | 5280 | RF02179 | Antisense RNA |
GGAGCGCCGCGACTCCTCA | 19 | 5198 | Not annotated | |
TCAGACAACTCTTAGA | 16 | 4734 | Not annotated | |
GGTCGCCTGAATACCGCAGCTAGGAAT | 27 | 4638 | Not annotated | |
GAGCGCCGCGACTCCT | 16 | 3836 | Not annotated | |
TCAGACAACTCTTAG | 15 | 3806 | RF02179 | Antisense RNA |
ATGTCAAAGTGAAGAAATT | 19 | 3729 | Not annotated | |
TCACTCTGCATCTCTC | 16 | 2158 | Not annotated | |
CTCAGACAACTCTTAG | 16 | 1902 | Not annotated | |
AAACGAGAGCTTTGAAGACCGA | 22 | 1616 | Not annotated | |
GGAGCGCCGCGACTCCT | 17 | 1528 | Not annotated |