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Table 1 Resources and databases available for P. tepidariorum research

From: The common house spider Parasteatoda tepidariorum

Resource/database

Description

Reference/URL/Accession Identifier

GenBank genome assembly Ptep_3.0

Latest version, but with no RefSeq

GCA_000365465.3

GenBank/RefSeq genome assembly Ptep_2.0

16,533 annotated scaffolds

[28]

GCF_000365465.2

aug3 gene models

Gene prediction with AUGSTUS

[28]

https://i5k.nal.usda.gov/Parasteatoda_tepidariorum

De novo transcriptome assembly

Based on ESTs and NGS reads, mixed sources

[39]

http://asgard.rc.fas.harvard.edu/

De novo transcriptome assembly

Based on NGS reads, adult whole body

[40]

DDBJ TSA: IAAA01000000

De novo transcriptome assemblies

Based on NGS reads, embryos of mixed stages

[38]

DDBJ TSA: IACA01000000, IABY00000000

Developmental transcriptomes

RNA-Seq for successive stages of embryogenesis

[41]

GEO: GSE112712

EST clones

5′ ends of 22,812 clones sequenced

[9, 11]

FY216297–FY225483; FY368221–FY381845

RefSeq genome assembly (NCBI)

Genome Data Viewer, BLAST

https://www.ncbi.nlm.nih.gov/assembly/GCF_000365465.2/

Common house spider genome project (BCM-HGSC)

Genomic resources

https://www.hgsc.bcm.edu/arthropods/common-house-spider-genome-project

Databases of Genome-based Research (BRH)

JBrowse with EST and RNA-Seq data tracks, BLAST, Protocols, Images/movies

https://www.brh2.jp/

ASGARD (Extavour Lab)

Search the assemblies of arthropod transcriptomes

[42]

http://asgard.rc.fas.harvard.edu/