Skip to main content

Table 1 Resources and databases available for P. tepidariorum research

From: The common house spider Parasteatoda tepidariorum

Resource/databaseDescriptionReference/URL/Accession Identifier
GenBank genome assembly Ptep_3.0Latest version, but with no RefSeqGCA_000365465.3
GenBank/RefSeq genome assembly Ptep_2.016,533 annotated scaffolds[28]
GCF_000365465.2
aug3 gene modelsGene prediction with AUGSTUS[28]
https://i5k.nal.usda.gov/Parasteatoda_tepidariorum
De novo transcriptome assemblyBased on ESTs and NGS reads, mixed sources[39]
http://asgard.rc.fas.harvard.edu/
De novo transcriptome assemblyBased on NGS reads, adult whole body[40]
DDBJ TSA: IAAA01000000
De novo transcriptome assembliesBased on NGS reads, embryos of mixed stages[38]
DDBJ TSA: IACA01000000, IABY00000000
Developmental transcriptomesRNA-Seq for successive stages of embryogenesis[41]
GEO: GSE112712
EST clones5′ ends of 22,812 clones sequenced[9, 11]
FY216297–FY225483; FY368221–FY381845
RefSeq genome assembly (NCBI)Genome Data Viewer, BLASThttps://www.ncbi.nlm.nih.gov/assembly/GCF_000365465.2/
Common house spider genome project (BCM-HGSC)Genomic resourceshttps://www.hgsc.bcm.edu/arthropods/common-house-spider-genome-project
Databases of Genome-based Research (BRH)JBrowse with EST and RNA-Seq data tracks, BLAST, Protocols, Images/movieshttps://www.brh2.jp/
ASGARD (Extavour Lab)Search the assemblies of arthropod transcriptomes[42]
http://asgard.rc.fas.harvard.edu/