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Table 1 Selected genes with transcripts enriched in the axial columnar cells compared to neural cells

From: Expression of smooth muscle-like effectors and core cardiomyocyte regulators in the contractile papillae of Ciona

ANISEED ID KH ID Name Top BLASTP hit in human AveLog(FC) p value Adj. p value Pct-1 Pct-2
Cirobu.g00014792 KH.S605.3 Crystallin Beta/Gamma CRYBB2 5.9 3E−48 4.02E−44 1 0.25
Cirobu.g00005701 KH.C3.516 7TM-KH.C3.516 None 4.1 6E−22 8.18E−18 0.92 0
Cirobu.g00006660 KH.C4.559 Calponin/Transgelin CNN1 3.5 5E−27 6.18E−23 1 0.16
Cirobu.g00014804 KH.S610.1 Calmodulin-related CALM2 3.2 3E−17 3.68E−13 0.83 0.07
Cirobu.g00010771 KH.L116.40 Atp2a (SERCA) ATP2A2 2.9 5E−21 7.19E−17 0.83 0.16
Cirobu.g00000306 KH.C1.1276 Calmodulin-related CALM1; CALM3; CALML3 2.8 7E−15 9.26E−11 0.92 0.18
Cirobu.g00009220 KH.C8.573 Calmodulin-related CALM1; CALM2; CALM3 2.3 3E−13 3.54E−09 0.83 0.19
Cirobu.g00009924 KH.C9.384 Mylk (MLCK) MYLK4 2.2 1E−14 1.65E−10 0.92 0.04
Cirobu.g00009359 KH.C8.70 IP3 Receptor ITPR1 2.1 2E−14 2.42E−10 0.83 0.2
Cirobu.g00011396 KH.L152.2 Islet ISL1 1.9 8E−11 1.08E−06 0.83 0.08
Cirobu.g00006733 KH.C4.626 Plec/Dsp/Eppk PLEC; DSP; EPPK1 1.8 4E−09 0.0000476 0.67 0.07
Cirobu.g00004386 KH.C2.209 Calmodulin-related CALM1; CALM3; CALML3 1.5 8E−08 0.001067 0.75 0.17
Cirobu.g00006467 KH.C4.381 PLC beta PLCB2 1.2 1E−04 1 0.67 0.15
Cirobu.g00002290 KH.C11.456 Myh9/10/11 MYH10 1.1 9E−06 0.117273 0.83 0.28
Cirobu.g00000433 KH.C1.216 Myl1/4/6 MYL1 1.0 7E−08 0.000904 1 0.93
Cirobu.g00001952 KH.C11.143 Myl9/12 MYL9; MYL12A; MYL12B 0.9 2E−06 0.023005 0.92 0.79
  1. List of genes discussed in this paper, identified by unique gene ID (Cirobu.gxxxxxxxx), KyotoHoya (KH) gene model ID, name given in this study, and Top BLASTP (after translation) hit in humans. Single-cell RNAseq data from [91] using Seurat [88] include Average Log(FC), p value, adjusted p value, Pct-1, and Pct-2. See text or [88] for details about scRNAseq values. See Additional file 2 for full ACC scRNAseq gene list