Table 1 List of genes and abbreviations used in this study.
Phylum | Species | Abbr | Genes used: Accession No./JGI model ID/Sponge ID |
|---|---|---|---|
Fungi | Zygosaccharomyces rouxii | Zro | ZroZF [XP_002498870] |
Saccharomyces cerevisiae | Sce | SceZF [NP_012479] | |
Candida glabrata | Cgl | Cgl [XP_447926] | |
Lancancea thermotolerans | Lth | Lth [XP_002556329] | |
Ctenophora | Mnemiopsis leidyi | MI | MIGlis [HM265718], MIGLi [Genbank submission number 1388697] |
Porifera | Amphimedon queenslandica | Amq | AmqGli2/3b [Aqu1.219964], AmqGli2/3a [Aqu1.217717], AmqGlis1/3 [Aqu1.213405] |
Placozoa | Trichoplax adhaerens | Tad | TadZic[XP_002108473], Tad1.40.97.1 [XP_002118240], Tad1.1.692.1 [XP_002107781] |
Cnidaria | Nematostella vectensis | Nv | NvZicA [AB231867], NvZicB [AB231868], NvZicC [AB231868], NvZicD [AB231868], NvZicE [AB231868], NvGli [EU162649], NvGlis [XP_001637240], NvNkl [XP_001636498] Nvpredprot [XP_001636147.1] |
Scolionema suvaense | Ssu | SsuZic [AB231883 ] | |
Hydra magnipapillata | Hma | HmaZic [XP_002166449 ] | |
Acoelomorpha | Convolutriloba longifissura | Clo | CloZic [HM235720] |
Platyhelminthes | Dugesia japonica | Dja | DjaZicA [AB231880], DjaZicB [AB231881] |
Dicyemida | Dicyema acuticephalum | Dac | DacZicA [AB266039 ], DacZicB [AB266038 ] |
Annelida | Tubifex tubifex | Ttu | TtuZic [AB231870 ] |
Capitella teleta | Ct | Ct-Zic [HM235719], Ct-Glis [e_gw1.3.96.1], Ct-Gli [e_gw1.36.42.1] | |
Mollusca | Loligo bleekeri | Lbl | LblZic [AB231874] |
Octopus ocellatus | Ooc | OocZic [AB231875] | |
Corbicula sp. | Cor | CorZic [BAE94134] | |
Spisula soldissima | Sso | SsoZic [BAE94123] | |
Nematoda | Caenorhabditis elegans | Cel | ref2 [AAM55473] |
Arthropoda | Drosophila melanogaster | Dme | opa [NP_524228], ci [NP_524617], Sug [AAS65032], imd [AAF57692] |
Ixodes scapularis | Isc | IscGli [XP_002435743] | |
Pandinus imperator | Pim | PimZic [AB231877] | |
Anopheles gambiae | Aga | AgaSug [XP_309008] ] | |
Echinodermata | Strongylocentrotus purpuratus | Spu | SpuZic [XP_792929], SpuGlis [XP_798511] |
Asterina pectinifera | Ape | ApeZic [AB231872 ] | |
Hemichordata | Saccoglossus kowaleski | Sko | SkoZic [NP_001158430], SkoGlis2 [XP_002738784] |
Chordata | Ciona intestinalis | Cin | CinZicL [NP_001071853], Cinmacho1 [NP_001027958], CinGli [NP_001071951], CinGlis [NP_001071922] |
Ciona savignyi | Csa | Csamacho1 [BAB68349] | |
Halocynthia roretzi | Hro | HroZicN [BAC23063] | |
Molgula tectiformis | Mte | MteZicL [BAE54350], Mtemacho1 [BAE54349] | |
Branchiostoma floridae | Bfl | BflZic (aka amphiZic) [CAB96573], BflGlis [XP_002611119], Bflpredprot [XP_002610135.1] | |
Xenopus laevis | Xla | XlaZic4 [BAF36750], XlaZic2 [AAH82436], XlaGli2 [AAD28180], XlaGlis2 [NP_001082092], XlaGli3 [NP_001081440.1] XlaZic3 [NP_001081088.1], XlaZic5 [BAA95699.1] | |
Mus musculus | Mmu | MmuZic5 [NP_075363], MmuZic2 [NP_033600], MmuZic1 [AAH60247], MmuGlis2 [AF325913], MmuGli1 [BAA85004.1], MmuGli2 [NP_001074594], MmuGli3 [NP_032156], MmuGlis1 [AAM93156], MmuGlis3 [ZB131654.1] MmuZic3 [CAM20754.1], MmuZic4 [NP_033602.2], MmuZF143 [EDL16976.1] | |
Rattus rattus | Rra | RraZic2 [NP_001101862], RraGli2 [NP_001100639], | |
Homo sapiens | Hsa | HsaZic2 [AAC96325], HsaGli3 [CAB59315], HsaGlis3 [CAH70655], HsaGlis1 [NP_671726], HsaGli1 [AAM13391.1] HsaGlis2 [NP_115964], HsaZic5 [NP_149123], HsaZic3 [NP_003404], HsaZic1 [NP_003403.2], HsaZic4 [AAH29507.1] HsaZF143 [CAC17610.1] | |
Canis familiaris | Cfa | CfaGlis3 [XP_541295], CfaGlis1 [XP_546702.2] | |
Bos taurus | Bta | BtaGlis1 [XP_615122], BtaGlis2 [DAA15722.1], BtaGlis3 [XP_002689658.1] | |
Monodelphis domestica | Mdo | MdoZic [XP_001376758] | |
Danio rerio | Dre | DreZic4 [NP_001070080], DreGli1 [NP_840081], DreGli2b [NP_001015069], DreZic5 [AAQ67349.1] DreZic1 [NP571008.1], DreZic3 [NP001001950.1], DreZic2 [AAG35717.2], DreZf143 [AA124736.1] | |
Gallus gallus | Gga | GgaZic1 [BAB92091], GgaGlis1 [XP_422485], GgaGli1 [P55878], GgaZF143 [XP_426401.2], | |
Ornithorhynchus anatinus | Orn | OrnZic4 [XP_001507901] |