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Table 1 List of genes and abbreviations used in this study.

From: Expression and phylogenetic analysis of the zic gene family in the evolution and development of metazoans

Phylum Species Abbr Genes used: Accession No./JGI model ID/Sponge ID
Fungi Zygosaccharomyces rouxii Zro ZroZF [XP_002498870]
  Saccharomyces cerevisiae Sce SceZF [NP_012479]
  Candida glabrata Cgl Cgl [XP_447926]
  Lancancea thermotolerans Lth Lth [XP_002556329]
Ctenophora Mnemiopsis leidyi MI MIGlis [HM265718], MIGLi [Genbank submission number 1388697]
Porifera Amphimedon queenslandica Amq AmqGli2/3b [Aqu1.219964], AmqGli2/3a [Aqu1.217717], AmqGlis1/3 [Aqu1.213405]
Placozoa Trichoplax adhaerens Tad TadZic[XP_002108473], Tad1.40.97.1 [XP_002118240], Tad1.1.692.1 [XP_002107781]
Cnidaria Nematostella vectensis Nv NvZicA [AB231867], NvZicB [AB231868], NvZicC [AB231868], NvZicD [AB231868], NvZicE [AB231868], NvGli [EU162649], NvGlis [XP_001637240], NvNkl [XP_001636498] Nvpredprot [XP_001636147.1]
  Scolionema suvaense Ssu SsuZic [AB231883 ]
  Hydra magnipapillata Hma HmaZic [XP_002166449 ]
Acoelomorpha Convolutriloba longifissura Clo CloZic [HM235720]
Platyhelminthes Dugesia japonica Dja DjaZicA [AB231880], DjaZicB [AB231881]
Dicyemida Dicyema acuticephalum Dac DacZicA [AB266039 ], DacZicB [AB266038 ]
Annelida Tubifex tubifex Ttu TtuZic [AB231870 ]
  Capitella teleta Ct Ct-Zic [HM235719], Ct-Glis [e_gw1.3.96.1], Ct-Gli [e_gw1.36.42.1]
Mollusca Loligo bleekeri Lbl LblZic [AB231874]
  Octopus ocellatus Ooc OocZic [AB231875]
  Corbicula sp. Cor CorZic [BAE94134]
  Spisula soldissima Sso SsoZic [BAE94123]
Nematoda Caenorhabditis elegans Cel ref2 [AAM55473]
Arthropoda Drosophila melanogaster Dme opa [NP_524228], ci [NP_524617], Sug [AAS65032], imd [AAF57692]
  Ixodes scapularis Isc IscGli [XP_002435743]
  Pandinus imperator Pim PimZic [AB231877]
  Anopheles gambiae Aga AgaSug [XP_309008] ]
Echinodermata Strongylocentrotus purpuratus Spu SpuZic [XP_792929], SpuGlis [XP_798511]
  Asterina pectinifera Ape ApeZic [AB231872 ]
Hemichordata Saccoglossus kowaleski Sko SkoZic [NP_001158430], SkoGlis2 [XP_002738784]
Chordata Ciona intestinalis Cin CinZicL [NP_001071853], Cinmacho1 [NP_001027958], CinGli [NP_001071951], CinGlis [NP_001071922]
  Ciona savignyi Csa Csamacho1 [BAB68349]
  Halocynthia roretzi Hro HroZicN [BAC23063]
  Molgula tectiformis Mte MteZicL [BAE54350], Mtemacho1 [BAE54349]
  Branchiostoma floridae Bfl BflZic (aka amphiZic) [CAB96573], BflGlis [XP_002611119], Bflpredprot [XP_002610135.1]
  Xenopus laevis Xla XlaZic4 [BAF36750], XlaZic2 [AAH82436], XlaGli2 [AAD28180], XlaGlis2 [NP_001082092], XlaGli3 [NP_001081440.1] XlaZic3 [NP_001081088.1], XlaZic5 [BAA95699.1]
  Mus musculus Mmu MmuZic5 [NP_075363], MmuZic2 [NP_033600], MmuZic1 [AAH60247], MmuGlis2 [AF325913], MmuGli1 [BAA85004.1], MmuGli2 [NP_001074594], MmuGli3 [NP_032156], MmuGlis1 [AAM93156], MmuGlis3 [ZB131654.1] MmuZic3 [CAM20754.1], MmuZic4 [NP_033602.2], MmuZF143 [EDL16976.1]
  Rattus rattus Rra RraZic2 [NP_001101862], RraGli2 [NP_001100639],
  Homo sapiens Hsa HsaZic2 [AAC96325], HsaGli3 [CAB59315], HsaGlis3 [CAH70655], HsaGlis1 [NP_671726], HsaGli1 [AAM13391.1] HsaGlis2 [NP_115964], HsaZic5 [NP_149123], HsaZic3 [NP_003404], HsaZic1 [NP_003403.2], HsaZic4 [AAH29507.1] HsaZF143 [CAC17610.1]
  Canis familiaris Cfa CfaGlis3 [XP_541295], CfaGlis1 [XP_546702.2]
  Bos taurus Bta BtaGlis1 [XP_615122], BtaGlis2 [DAA15722.1], BtaGlis3 [XP_002689658.1]
  Monodelphis domestica Mdo MdoZic [XP_001376758]
  Danio rerio Dre DreZic4 [NP_001070080], DreGli1 [NP_840081], DreGli2b [NP_001015069], DreZic5 [AAQ67349.1]
DreZic1 [NP571008.1], DreZic3 [NP001001950.1], DreZic2 [AAG35717.2], DreZf143 [AA124736.1]
  Gallus gallus Gga GgaZic1 [BAB92091], GgaGlis1 [XP_422485], GgaGli1 [P55878], GgaZF143 [XP_426401.2],
  Ornithorhynchus anatinus Orn OrnZic4 [XP_001507901]