Table 1 Comparison of Ophiocoma wendtii gastrula transcripts to the Strongylocentrotus purpuratus endodermal and endomesodermal gene regulatory networks
From: Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii
| Gene | Found in O.w. gastrula | RBB toS.p. Genome [SpBase:] | RBB to NCBI RefSeq Proteins [NCBI:] | Role in S.p. |
|---|---|---|---|---|
| β-Catenin | Y | β-Catenin | S.p. β-Catenin | Endoderm |
| [SPU_004319] | [XP_786059.2] | |||
| Otx | Y | Otx | S.p. Otx | Endoderm |
| [SPU_010424] | [NP_999753.2] | |||
| Wnt | Y | Wnt5 | S.k. Wnt2 | Endoderm |
| [SPU_026277] | [NP_001158455.1] | |||
| Blimp1 | Y | Blimp1/Krox | B.f. Zn-finger | Endoderm |
| [SPU_027235] | [XP_002587482.1] | |||
| Hox11/13b | Y | Hox11/13b | S.p. Hox11/13b | Endoderm |
| [SPU_002631] | [NP_999774.1] | |||
| Bra | N | Endoderm | ||
| Krl | N | Endoderm | ||
| Myc | Y | Myc | S.p. Myc | Endoderm |
| [SPU_003166] | [NP_999744.1] | |||
| SoxB1 | Y | SoxB1 | S.p. SoxB1 | Endoderm |
| [SPU_022820] | [NP_999639.1] | |||
| Brn1-2-4 | Y | Brn1-2-4 | S.p. Brn1-2-4 | Endoderm |
| [SPU_016443] | [XP_782909.2] | |||
| Tgif | Y | Tgif | I.s. Tgif | Endoderm |
| [SPU_018126] | [XP_002433653.1] | |||
| Hnf1 | N | Endoderm | ||
| Eve | N | Endoderm | ||
| Hh | N | Endoderm | ||
| VEGF | Y | VEGF | H.p. VEGF | Endoderm |
| [SPU_030148] | BAI67115.1] | |||
| Dac | Y | Dac | I.s. Dachsund | Endoderm |
| [SPU_028061] | [XP_002407755.1] | |||
| Endo16 | N | Endoderm | ||
| FoxA | Y | FoxA | S.p. FoxA | Endo + SMC |
| [SPU_006676] | [NP_001073010.1] | |||
| GataE | N | Endo + SMC | ||
| Kakapo | Y | Syne1 | S.p. Similar to CG33715-PD | Endo + SMC |
| [SPU_013237] | [XP_784190.2] | |||
| Apobec | Y | Hnrpr | S.p. Hnrpr | Endo + SMC |
| [SPU_019557] | [XP_793277.1] | |||
| Gelsolin | Y | Gelsolin | S.p. Gelsolin | Endo + SMC |
| [SPU_003985] | [XP_788777.1] |