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Table 1 List of contigs in the P region expressed differentially among H. numata morphs at prepupa and/or day-1 pupa stages

From: Unravelling the genes forming the wing pattern supergene in the polymorphic butterfly Heliconius numata

Contig Median position in scaf215006 Best BLASTn hit in Hmel genome (version Hmel2) scaf215006 Prepupa (logFC vs. aur) Log CPM Day-1 pupa (logFC vs. aur) Log CPM DE significant (FDR < 0.001)
bic bic/tar tar sil tar
comp141924_c0_seq1 1,135,136 Intergenic − 3.0 − 2.8 − 3.4 − 1.82 0.5 1.4 − 1.36 Prepupa
comp96881_c0_seq1 1145125 HMEL000022 intron 2 0.9 − 1.0 − 0.9 − 4.61 − 2.9 − 2.4 − 1.09 Day-1 pupa
comp94831_c0_seq1* 1,148,671 HMEL032677 intron 3 3.4 3.2 2.2 − 1.97 − 3.0 0.9 − 0.18 Day-1 pupa
comp90289_c0_seq1* 1,149,824 HMEL000024 intron 2 3.4 2.9 1.7 − 2.73 − 5.1 − 0.5 − 0.47 Day-1 pupa
comp35900_c0_seq2* 1,150,543 HMEL000024 CDS 0.9 0.6 1.0 − 0.80 − 2.6 1.0 − 0.17 Day-1 pupa
comp35224_c0_seq1 1,151,211 HMEL000024 CDS 2.1 2.5 2.9 1.59 − 1.1 0.6 2.67 Prepupa
comp284389_c0_seq1* 1,153,003 HMEL032678 CDS − 2.1 1.7 3.1 − 2.36 2.9 − 1.4 − 2.74 Day-1 pupa
comp292494_c0_seq1 1,158,885 HMEL002023g2 CDS − 1.7 − 2.6 − 5.8 − 5.21 − 4.6 − 9.5 − 1.67 Day-1 pupa
comp45148_c0_seq1 1,205,329 Cortex CDS 1.1 0.5 − 3.0 2.29 3.8 − 1.2 3.95 Both stages
comp45148_c0_seq2 1,205,329 Cortex CDS 0.9 0.2 − 3.3 2.21 3.9 − 1.4 4.00 Both stages
comp217022_c0_seq1 1,205,576 Cortex intron 8 4.6 4.1 0.0 − 2.05 5.1 − 0.4 − 3.48 Both stages
comp388498_c0_seq1 1,207,870 Cortex intron 1 − 1.9 0.5 − 6.0 − 4.13 3.7 − 0.6 − 2.59 Day-1 pupa
comp407410_c0_seq1 1,221,611 Cortex intron 1 3.5 3.6 − 4.1 − 2.91 3.9 − 2.4 − 5.73 Prepupa
comp398064_c0_seq1 1,228,279 Cortex intron 1 8.5 8.1 0.0 − 2.22 2.4 1.2 − 4.48 Prepupa
comp601770_c0_seq1 1,229,498 Cortex intron 1 4.4 3.2 − 3.2 − 3.43 3.4 0.0 − 8.88 Prepupa
comp415437_c0_seq1 1,230,060 Cortex intron 1 5.2 4.0 − 0.8 − 1.78 2.5 2.2 − 5.05 Prepupa
comp423466_c0_seq1 1,230,537 Cortex intron 1 7.4 6.9 0.0 − 3.40 − 3.2 0.5 − 6.95 Prepupa
comp407210_c0_seq1 1,231,923 Cortex intron 1 8.7 7.3 0.0 − 2.35 − 3.7 1.6 − 5.67 Prepupa
comp467980_c0_seq1 1,232,299 Cortex intron 1 3.8 3.0 − 0.5 − 2.38 0.1 1.0 − 4.12 Prepupa
comp472259_c0_seq1 1,234,155 Cortex intron 1 4.1 2.7 − 4.1 − 2.78 0.0 3.7 − 7.93 Prepupa
comp700774_c0_seq1 1,235,209 Cortex intron 1 8.0 6.3 0.0 − 3.16 0.1 1.1 − 6.32 Prepupa
comp321273_c0_seq1 1,239,339 Cortex intron 1 5.0 4.2 − 4.1 − 1.77 − 3.8 − 3.8 − 7.32 Prepupa
comp62384_c0_seq1 1,241,229 Cortex intron 1 8.9 7.6 − 3.2 − 4.18 − 3.2 − 3.2 − 7.93 Prepupa
comp31128_c1_seq1 1,241,616 Cortex intron 1 6.2 5.1 0.6 0.25 − 1.1 0.5 − 3.61 Prepupa
comp31128_c1_seq2 1,241,750 Cortex intron 1 9.0 7.9 − 3.2 1.20 − 0.8 − 1.0 − 5.15 Prepupa
comp83470_c0_seq1 1,242,240 Cortex intron 1 6.9 5.7 − 0.7 2.22 1.1 1.0 − 4.80 Prepupa
comp90384_c0_seq1 1,242,543 Cortex intron 1 5.5 4.0 − 4.2 − 1.42 − 2.4 1.9 − 6.95 Prepupa
comp382243_c0_seq1 1,243,573 Cortex intron 1 8.9 7.7 0.0 − 2.08 − 3.7 − 0.9 − 6.98 Prepupa
comp144920_c0_seq1 1,248,924 Cortex intron 1 − 0.1 − 1.3 − 8.3 − 2.05 − 6.6 − 1.8 − 4.34 Prepupa
comp615571_c0_seq1 1,250,088 Cortex intron 1 − 7.5 − 7.5 − 7.5 − 4.05 − 1.6 − 2.1 − 5.80 Prepupa
comp386445_c0_seq1 1,252,499 Cortex intron 1 3.5 1.5 − 5.8 − 1.80 − 0.4 0.1 − 6.33 Prepupa
comp527091_c0_seq1 1,254,035 Cortex intron 1 4.9 3.8 − 3.1 − 2.91 − 3.3 1.0 − 6.62 Prepupa
comp572350_c0_seq1 1,254,350 Cortex intron 1 4.3 3.0 − 4.1 − 2.69 − 3.7 − 0.9 − 6.98 Prepupa
comp331233_c0_seq1 1,257,539 Cortex intron 1 8.2 6.2 3.2 − 2.98 − 3.2 − 0.4 − 7.38 Prepupa
comp115525_c0_seq1* 1,387,318 HMEL000026 CDS 3.2 4.1 0.0 − 6.18 − 4.1 1.5 − 2.08 Day-1 pupa
comp8094_c0_seq1* 1,407,093 Intergenic 2.2 2.4 1.4 − 3.12 − 3.7 1.7 − 1.46 Day-1 pupa
comp54294_c0_seq1* 1,464,919 Intergenic − 0.4 − 0.8 − 2.0 0.14 − 3.0 0.2 1.02 Day-1 pupa
comp131953_c0_seq1* 1,470,921 HMEL032680 intron 3 0.2 − 0.3 − 1.6 − 2.11 − 3.6 0.1 − 1.21 Day-1 pupa
comp223361_c0_seq1 1,474,761 HMEL032680 intron 1 − 8.6 − 8.6 − 8.6 − 2.96 − 9.1 − 9.1 − 2.11 Both stages
comp211996_c0_seq1 1,488,546 HMEL000036 intron 4 − 3.8 − 7.9 − 7.9 − 3.57 − 4.1 − 3.5 − 2.54 Both stages
comp166797_c0_seq1 1,578,231 HMEL000049 CDS 5.9 5.0 − 0.9 − 0.93 1.0 0.5 − 3.57 Prepupa
comp17881_c0_seq1 1,638,684 Intergenic 0.1 0.6 0.1 − 4.21 − 3.6 − 2.3 − 0.96 Day-1 pupa
  1. Values represent − log10 fold changes (FC) of up- (positive) or downregulation (negative) in comparison with expression values in aurora morph (set to 0). LogCPM (i.e. log2 of counts-per-million) values are proportional to overall expression levels of each gene.*Genes located near the breakpoints of the first inversion