Table 1 List of contigs in the P region expressed differentially among H. numata morphs at prepupa and/or day-1 pupa stages
Contig | Median position in scaf215006 | Best BLASTn hit in Hmel genome (version Hmel2) scaf215006 | Prepupa (logFC vs. aur) | Log CPM | Day-1 pupa (logFC vs. aur) | Log CPM | DE significant (FDR < 0.001) | |||
|---|---|---|---|---|---|---|---|---|---|---|
bic | bic/tar | tar | sil | tar | ||||||
comp141924_c0_seq1 | 1,135,136 | Intergenic | − 3.0 | − 2.8 | − 3.4 | − 1.82 | 0.5 | 1.4 | − 1.36 | Prepupa |
comp96881_c0_seq1 | 1145125 | HMEL000022 intron 2 | 0.9 | − 1.0 | − 0.9 | − 4.61 | − 2.9 | − 2.4 | − 1.09 | Day-1 pupa |
comp94831_c0_seq1* | 1,148,671 | HMEL032677 intron 3 | 3.4 | 3.2 | 2.2 | − 1.97 | − 3.0 | 0.9 | − 0.18 | Day-1 pupa |
comp90289_c0_seq1* | 1,149,824 | HMEL000024 intron 2 | 3.4 | 2.9 | 1.7 | − 2.73 | − 5.1 | − 0.5 | − 0.47 | Day-1 pupa |
comp35900_c0_seq2* | 1,150,543 | HMEL000024 CDS | 0.9 | 0.6 | 1.0 | − 0.80 | − 2.6 | 1.0 | − 0.17 | Day-1 pupa |
comp35224_c0_seq1 | 1,151,211 | HMEL000024 CDS | 2.1 | 2.5 | 2.9 | 1.59 | − 1.1 | 0.6 | 2.67 | Prepupa |
comp284389_c0_seq1* | 1,153,003 | HMEL032678 CDS | − 2.1 | 1.7 | 3.1 | − 2.36 | 2.9 | − 1.4 | − 2.74 | Day-1 pupa |
comp292494_c0_seq1 | 1,158,885 | HMEL002023g2 CDS | − 1.7 | − 2.6 | − 5.8 | − 5.21 | − 4.6 | − 9.5 | − 1.67 | Day-1 pupa |
comp45148_c0_seq1 | 1,205,329 | Cortex CDS | 1.1 | 0.5 | − 3.0 | 2.29 | 3.8 | − 1.2 | 3.95 | Both stages |
comp45148_c0_seq2 | 1,205,329 | Cortex CDS | 0.9 | 0.2 | − 3.3 | 2.21 | 3.9 | − 1.4 | 4.00 | Both stages |
comp217022_c0_seq1 | 1,205,576 | Cortex intron 8 | 4.6 | 4.1 | 0.0 | − 2.05 | 5.1 | − 0.4 | − 3.48 | Both stages |
comp388498_c0_seq1 | 1,207,870 | Cortex intron 1 | − 1.9 | 0.5 | − 6.0 | − 4.13 | 3.7 | − 0.6 | − 2.59 | Day-1 pupa |
comp407410_c0_seq1 | 1,221,611 | Cortex intron 1 | 3.5 | 3.6 | − 4.1 | − 2.91 | 3.9 | − 2.4 | − 5.73 | Prepupa |
comp398064_c0_seq1 | 1,228,279 | Cortex intron 1 | 8.5 | 8.1 | 0.0 | − 2.22 | 2.4 | 1.2 | − 4.48 | Prepupa |
comp601770_c0_seq1 | 1,229,498 | Cortex intron 1 | 4.4 | 3.2 | − 3.2 | − 3.43 | 3.4 | 0.0 | − 8.88 | Prepupa |
comp415437_c0_seq1 | 1,230,060 | Cortex intron 1 | 5.2 | 4.0 | − 0.8 | − 1.78 | 2.5 | 2.2 | − 5.05 | Prepupa |
comp423466_c0_seq1 | 1,230,537 | Cortex intron 1 | 7.4 | 6.9 | 0.0 | − 3.40 | − 3.2 | 0.5 | − 6.95 | Prepupa |
comp407210_c0_seq1 | 1,231,923 | Cortex intron 1 | 8.7 | 7.3 | 0.0 | − 2.35 | − 3.7 | 1.6 | − 5.67 | Prepupa |
comp467980_c0_seq1 | 1,232,299 | Cortex intron 1 | 3.8 | 3.0 | − 0.5 | − 2.38 | 0.1 | 1.0 | − 4.12 | Prepupa |
comp472259_c0_seq1 | 1,234,155 | Cortex intron 1 | 4.1 | 2.7 | − 4.1 | − 2.78 | 0.0 | 3.7 | − 7.93 | Prepupa |
comp700774_c0_seq1 | 1,235,209 | Cortex intron 1 | 8.0 | 6.3 | 0.0 | − 3.16 | 0.1 | 1.1 | − 6.32 | Prepupa |
comp321273_c0_seq1 | 1,239,339 | Cortex intron 1 | 5.0 | 4.2 | − 4.1 | − 1.77 | − 3.8 | − 3.8 | − 7.32 | Prepupa |
comp62384_c0_seq1 | 1,241,229 | Cortex intron 1 | 8.9 | 7.6 | − 3.2 | − 4.18 | − 3.2 | − 3.2 | − 7.93 | Prepupa |
comp31128_c1_seq1 | 1,241,616 | Cortex intron 1 | 6.2 | 5.1 | 0.6 | 0.25 | − 1.1 | 0.5 | − 3.61 | Prepupa |
comp31128_c1_seq2 | 1,241,750 | Cortex intron 1 | 9.0 | 7.9 | − 3.2 | 1.20 | − 0.8 | − 1.0 | − 5.15 | Prepupa |
comp83470_c0_seq1 | 1,242,240 | Cortex intron 1 | 6.9 | 5.7 | − 0.7 | 2.22 | 1.1 | 1.0 | − 4.80 | Prepupa |
comp90384_c0_seq1 | 1,242,543 | Cortex intron 1 | 5.5 | 4.0 | − 4.2 | − 1.42 | − 2.4 | 1.9 | − 6.95 | Prepupa |
comp382243_c0_seq1 | 1,243,573 | Cortex intron 1 | 8.9 | 7.7 | 0.0 | − 2.08 | − 3.7 | − 0.9 | − 6.98 | Prepupa |
comp144920_c0_seq1 | 1,248,924 | Cortex intron 1 | − 0.1 | − 1.3 | − 8.3 | − 2.05 | − 6.6 | − 1.8 | − 4.34 | Prepupa |
comp615571_c0_seq1 | 1,250,088 | Cortex intron 1 | − 7.5 | − 7.5 | − 7.5 | − 4.05 | − 1.6 | − 2.1 | − 5.80 | Prepupa |
comp386445_c0_seq1 | 1,252,499 | Cortex intron 1 | 3.5 | 1.5 | − 5.8 | − 1.80 | − 0.4 | 0.1 | − 6.33 | Prepupa |
comp527091_c0_seq1 | 1,254,035 | Cortex intron 1 | 4.9 | 3.8 | − 3.1 | − 2.91 | − 3.3 | 1.0 | − 6.62 | Prepupa |
comp572350_c0_seq1 | 1,254,350 | Cortex intron 1 | 4.3 | 3.0 | − 4.1 | − 2.69 | − 3.7 | − 0.9 | − 6.98 | Prepupa |
comp331233_c0_seq1 | 1,257,539 | Cortex intron 1 | 8.2 | 6.2 | 3.2 | − 2.98 | − 3.2 | − 0.4 | − 7.38 | Prepupa |
comp115525_c0_seq1* | 1,387,318 | HMEL000026 CDS | 3.2 | 4.1 | 0.0 | − 6.18 | − 4.1 | 1.5 | − 2.08 | Day-1 pupa |
comp8094_c0_seq1* | 1,407,093 | Intergenic | 2.2 | 2.4 | 1.4 | − 3.12 | − 3.7 | 1.7 | − 1.46 | Day-1 pupa |
comp54294_c0_seq1* | 1,464,919 | Intergenic | − 0.4 | − 0.8 | − 2.0 | 0.14 | − 3.0 | 0.2 | 1.02 | Day-1 pupa |
comp131953_c0_seq1* | 1,470,921 | HMEL032680 intron 3 | 0.2 | − 0.3 | − 1.6 | − 2.11 | − 3.6 | 0.1 | − 1.21 | Day-1 pupa |
comp223361_c0_seq1 | 1,474,761 | HMEL032680 intron 1 | − 8.6 | − 8.6 | − 8.6 | − 2.96 | − 9.1 | − 9.1 | − 2.11 | Both stages |
comp211996_c0_seq1 | 1,488,546 | HMEL000036 intron 4 | − 3.8 | − 7.9 | − 7.9 | − 3.57 | − 4.1 | − 3.5 | − 2.54 | Both stages |
comp166797_c0_seq1 | 1,578,231 | HMEL000049 CDS | 5.9 | 5.0 | − 0.9 | − 0.93 | 1.0 | 0.5 | − 3.57 | Prepupa |
comp17881_c0_seq1 | 1,638,684 | Intergenic | 0.1 | 0.6 | 0.1 | − 4.21 | − 3.6 | − 2.3 | − 0.96 | Day-1 pupa |