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Table 1 Naming mechanisms for acetylcholine receptors

From: Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarian–bilaterian common ancestor

Our name JGI: protein ID NvERTx [6] (Genome) [10] (single-cell RNAseq.) [27] (in situ) JGI/ [28] (RNA-seq)
NvnAChRaA 31824 NvERTx.4.110720     31824/NvERTx.4.110720
NvnAChRaB 50745 NvERTx.4.143847     50745/NvERTx.4.143847
NvnAChRaC 11255 NvERTx.4.141630     11255/NvERTx.4.141630
NvnAChRaD 214990 NvERTx.4.137798 214990* 214990* (N/tlM)   
NvnAChRaE 91941 NvERTx.4.75581 91941* 91941* (N/tlM)   
NvnAChRaF 61041 NvERTx.4.55041     61041/NvERTx.4.55041*
NvnAChRaG 85724 NvERTx.4.110720   85724* (N/tlM)   
NvnAChRaH 85091 NvERTx.4.88235 85091*    
NvnAChRaI 205808 NvERTx.4.61521 205808* 205808* (N/tlM)   
NvnAChRaJ 199721 NvERTx.4.82387 199721*   ao145* (AO)  
NvnAChRaK 110265 NvERTx.4.147304 110265*   ao19* (AO)  
NvnAChRaL 205856 NvERTx.4.61144     205856/NvERTx.4.61144
NvnAChRaM 32916 NvERTx.4.161999     32916/NvERTx.4.161999
NvnAChRaN 205855 NvERTx.4.63946 205855    
NvnAChRaO 40806 NvERTx.4.31008     40806/NvERTx.4.31008
NvnAChRaP 87907 NvERTx.4.85000     87907/NvERTx.4.85000
NvnAChRaQ 198343 NvERTx.4.152487 198343*    
NvnAChRaR 198927 NvERTx.4.153628 198927* 198927* (N/tlM)   
NvnAChRaS 200917 NvERTx.4.111130 200917    
NvnAChRaT 40919 NvERTx.4.145232 40919    
NvnAChRaU 91696 NvERTx.4.52490 91696 91696* (N/M)   
NvnAChRaV 216224 NvERTx.4.141630   216224* (N/tlM/G)   
NvnAChRaW 57113 NvERTx.4.97064   57113 (N/G)   
NvnAChRaX 91371 NvERTx.4.56195   91371 (N/M)   
NvnAChRaY 79911 NvERTx.4.127752   79911 (N/M)   
NvnAChRaZ 97337 NvERTx.4.72427   97337* (N/M)   
Previously identified Ach. receptors that are removed in this study
 All missing cysteine loop 240779 NvERTx.4.60558 240779 240779 (tlM)   
247410 NvERTx.4.76805 247410    
22673 NvERTx.4.133515   22673 (N/tlM)   
2281 NvERTx.4.56575   2281 (N/M)   
205764 NvERTx.4.109818     205764/NvERTx.4.109818
  1. A collection of previously identified, named, and characterized acetylcholine receptors gathered from the literature, BLAST searches of the JGI Nematostella genome (https://genome.jgi.doe.gov/Nemve1/Nemve1.home.html), and identified from BLAST searches of the NvERTx database (http://ircan.unice.fr/ER/ER_plotter/home). Confirmed nicotinic acetylcholine receptors are listed in the top portion of the table and were renamed NvnAChRαA-Z. Previously identified receptors that lack necessary features of nAChRs were excluded from analysis and are listed in the bottom portion of the table. Previously published expression patterns for acetylcholine receptors, and the publication they were described in, are indicated for each gene. N neurons, M muscle, tlM tentacular and/or longitudinal muscle, G gonad, AO apical organ. Asterisk indicates genes we obtained mRNA in situ hybridization patterns for in Fig. 4