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Table 1 Naming mechanisms for acetylcholine receptors

From: Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarian–bilaterian common ancestor

Our name

JGI: protein ID

NvERTx

[6] (Genome)

[10] (single-cell RNAseq.)

[27] (in situ)

JGI/ [28] (RNA-seq)

NvnAChRaA

31824

NvERTx.4.110720

   

31824/NvERTx.4.110720

NvnAChRaB

50745

NvERTx.4.143847

   

50745/NvERTx.4.143847

NvnAChRaC

11255

NvERTx.4.141630

   

11255/NvERTx.4.141630

NvnAChRaD

214990

NvERTx.4.137798

214990*

214990* (N/tlM)

  

NvnAChRaE

91941

NvERTx.4.75581

91941*

91941* (N/tlM)

  

NvnAChRaF

61041

NvERTx.4.55041

   

61041/NvERTx.4.55041*

NvnAChRaG

85724

NvERTx.4.110720

 

85724* (N/tlM)

  

NvnAChRaH

85091

NvERTx.4.88235

85091*

   

NvnAChRaI

205808

NvERTx.4.61521

205808*

205808* (N/tlM)

  

NvnAChRaJ

199721

NvERTx.4.82387

199721*

 

ao145* (AO)

 

NvnAChRaK

110265

NvERTx.4.147304

110265*

 

ao19* (AO)

 

NvnAChRaL

205856

NvERTx.4.61144

   

205856/NvERTx.4.61144

NvnAChRaM

32916

NvERTx.4.161999

   

32916/NvERTx.4.161999

NvnAChRaN

205855

NvERTx.4.63946

205855

   

NvnAChRaO

40806

NvERTx.4.31008

   

40806/NvERTx.4.31008

NvnAChRaP

87907

NvERTx.4.85000

   

87907/NvERTx.4.85000

NvnAChRaQ

198343

NvERTx.4.152487

198343*

   

NvnAChRaR

198927

NvERTx.4.153628

198927*

198927* (N/tlM)

  

NvnAChRaS

200917

NvERTx.4.111130

200917

   

NvnAChRaT

40919

NvERTx.4.145232

40919

   

NvnAChRaU

91696

NvERTx.4.52490

91696

91696* (N/M)

  

NvnAChRaV

216224

NvERTx.4.141630

 

216224* (N/tlM/G)

  

NvnAChRaW

57113

NvERTx.4.97064

 

57113 (N/G)

  

NvnAChRaX

91371

NvERTx.4.56195

 

91371 (N/M)

  

NvnAChRaY

79911

NvERTx.4.127752

 

79911 (N/M)

  

NvnAChRaZ

97337

NvERTx.4.72427

 

97337* (N/M)

  

Previously identified Ach. receptors that are removed in this study

 All missing cysteine loop

240779

NvERTx.4.60558

240779

240779 (tlM)

  

247410

NvERTx.4.76805

247410

   

22673

NvERTx.4.133515

 

22673 (N/tlM)

  

2281

NvERTx.4.56575

 

2281 (N/M)

  

205764

NvERTx.4.109818

   

205764/NvERTx.4.109818

  1. A collection of previously identified, named, and characterized acetylcholine receptors gathered from the literature, BLAST searches of the JGI Nematostella genome (https://genome.jgi.doe.gov/Nemve1/Nemve1.home.html), and identified from BLAST searches of the NvERTx database (http://ircan.unice.fr/ER/ER_plotter/home). Confirmed nicotinic acetylcholine receptors are listed in the top portion of the table and were renamed NvnAChRαA-Z. Previously identified receptors that lack necessary features of nAChRs were excluded from analysis and are listed in the bottom portion of the table. Previously published expression patterns for acetylcholine receptors, and the publication they were described in, are indicated for each gene. N neurons, M muscle, tlM tentacular and/or longitudinal muscle, G gonad, AO apical organ. Asterisk indicates genes we obtained mRNA in situ hybridization patterns for in Fig. 4
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