Table 1 Campanulaceae species used in this study, including Genbank numbers for each sequenced gene/allele in each CYC gene clade
From: Duplication and expression patterns of CYCLOIDEA-like genes in Campanulaceae
Clade | Label | Genus | Species | CYC1 | CYC2B | CYC2A | CYC3 |
|---|---|---|---|---|---|---|---|
Campanuloideae | JC002(JT) | Campanula | carpatica | OM262907 | OM263037 | OM263196 | |
Campanuloideae | JC008(JT) | Campanula | cochleariifolia | OM262908 OM262909 | |||
Campanuloideae | 3195(NC) | Campanula | drabifolia | OM263198 | |||
Campanuloideae | JC006(JT) | Campanula | glomerata | OM262910 | OM263038 | ||
Campanuloideae | CP011(JT) | Platycodon | grandiflorus | OM262918 | OM263039 | ||
Campanuloideae | CJ009(JT) | Jasione | montana | OM262915 | |||
Campanuloideae | CJ001(JT) | Campanula | persicifolia | OM262911 OM262912 | |||
Campanuloideae | JC007(JT) | Campanula | portenschlagiana | OM262913 OM262914 | OM263197 | ||
Campanuloideae | CP012(JT) | Phyteuma | scheuchzeri | OM262916 OM262917 | OM263036 | ||
Cyphioideae | K4686 | Cyphia | comptonii | OM262919 | OM263203 OM263209 | ||
Cyphioideae | P5532 | Cyphia | digitata | OM262920 | OM263199 OM263200 | ||
Cyphioideae | K4725 | Cyphia | eckloniana | OM262921 | OM263207 | ||
Cyphioideae | K2340 | Cyphia | lasiandra | OM262922 | OM263210 | ||
Cyphioideae | K4734 | Cyphia | longipetala | OM262924 | OM263201 OM263204 | ||
Cyphioideae | P5461 | Cyphia | rogersii | OM262925 | OM263208 | ||
Cyphioideae | K4831 | Cyphia | smutsii | OM263211 | |||
Cyphioideae | P5555 | Cyphia | sp. nov | OM262923 | OM263202 OM263205 | ||
Cyphioideae | K4726 | Cyphia | volubilis | OM262926 | OM263212 | ||
Cyphioideae | K4675 | Cyphia | zeyheriana | OM262927 | OM263206 | ||
Lobelioideae | |||||||
Genistoid E | K4216 | Lobelia | baumannii | OM262958 | OM263140 | OM263055 | |
Genistoid E | K4942 | Lobelia | comptonii | OM262965 | OM263061 | ||
Genistoid E | K4773 | Lobelia | dasyphylla | OM262969 | OM263063 | ||
Genistoid E | K4314 | Lobelia | goetzei | OM262973 | OM263154 | OM263066 | |
Genistoid E | K3316 | Lobelia | hartlaubii | OM262976 | OM263114 | OM263067 | |
Genistoid E | K4814 | Lobelia | malowensis | OM262987 | OM263159 | OM263070 | |
Genistoid E | K4609 | Lobelia | patula | OM262991 | OM263075 | OM263076 | |
Genistoid E | P5475 | Lobelia | pteropoda | OM262992 | OM263079 | ||
Genistoid E | K4634 | Lobelia | tomentosa | OM263010 | OM263177 | ||
Genistoid E | K4654 | Lobelia | vanreenensis | OM263014 | OM263094 | ||
Impares F | K5251 | Lobelia | cleistogamoides | OM262962 OM262963 | OM263215 | ||
Impares F | K5245A | Lobelia | heterophylla | OM262964 | OM263213 OM263214 | ||
Impares F | K5210 | Colensoa | physaloides | OM262935 OM262936 | OM263218 | ||
Impares F | K5242 | Lobelia | rarifolia | OM262994 OM262995 | OM263080 | ||
Impares F | K5259 | Lobelia | rhombifolia | OM262996 OM262997 | OM263081 | ||
Impares F | K5253 | Lobelia | rhytidosperma | OM262998 | OM263084 | ||
Impares F | K5279 | Lobelia | simplicicaulis | OM263000 OM263002 | OM263172 | OM263087 | |
Impares F | K5234 | Lobelia | tenuior | OM263007 | OM263216 | ||
Impares F | A10185 | Lobelia | trigonocaulis | OM263011 | OM263091 | OM263217 | |
Impares F | K5252 | Lobelia | winifrediae | OM263082 | OM263083 | ||
Monopsis G | K4628 | Monopsis | alba | OM263023 | OM263108 | OM263107 | |
Monopsis G | K4790 | Monopsis | debilis | OM263025 | |||
Monopsis G | K4646 | Monopsis | decipiens | OM263024 | OM263104 | ||
Monopsis G | K5116 | Monopsis | flava | OM263026 | |||
Monopsis G | K4402 | Monopsis | stellarioides | OM263027 | OM263109 | ||
Monopsis G | P5246 | Monopsis | unidentata | OM263028 | OM263105 OM263106 | ||
Broom H | P5621 | Lobelia | lasiantha | OM262978 | |||
Broom H | K4599 | Lobelia | linearis | OM262980 | |||
Grammatotheca I | K4642 | Lobelia | thermalis | OM263089 | |||
Erinoid L | K4951 | Lobelia | boivinii | OM263057 | |||
Erinoid L | K3475 | Lobelia | cymbalarioides | OM262968 | OM263062 | ||
Erinoid L | JL002(JT) | Lobelia | erinus | OM262970 | OM263152 | OM263065 | |
Erinoid L | K4964 | Lobelia | inconspicua | OM263068 | |||
Erinoid L | K3401 | Lobelia | minutula | OM262988 | OM263073 | ||
Erinoid L | K4841 | Lobelia | wilmsiana | OM263017 | OM263090 | ||
Wimmerella M | K5276 | Lobelia | anceps | OM263137 | |||
Wimmerella M | K4685 | Wimmerella | bifida | OM263035 | OM263192 | ||
Wimmerella M | K4594 | Wimmerella | hederacea | OM263033 | OM263193 | OM263097 | |
Wimmerella M | K4545 | Wimmerella | pygmaea | OM263034 | OM263194 | OM263101 | |
Wimmerella M | K5104 | Wimmerella | secunda | OM263195 | OM263102 | ||
Mezlerioid3 N | K5182 | Lobelia | jasionoides | OM262977 | OM263155 | ||
Mezlerioid3 N | K4566 | Lobelia | laurentioides | OM262979 | OM263157 | ||
Mezlerioid3 N | K4589 | Lobelia | muscoides | OM262989 | OM263161 | ||
Solenopsis O | Gr04/1 | Lobelia | urens | OM263180 | OM263092 | ||
W North America P | K4663 | Downingia | bicornuta | OM262948 | |||
W North America P | UCBG770105 | Palmerella | debilis | OM262946 | OM263098 | ||
W North America P | K4667 | Porterella | carnosula | OM262947 | OM263115 | OM263099 | |
Diastatea Q | Wo8295 | Diastatea | micrantha | OM263110 OM263111 | OM263050 | ||
E North America R | Jl007(JT) | Lobelia | cardinalis | OM263146 | OM263060 | ||
E North America R | K5282 | Lobelia | dortmanna | OM263151 | |||
E North America R | K2408 | Lobelia | fenestralis | OM262949 | OM263112 | ||
E North America R | K5092 | Lobelia | puberula | OM263113 | |||
E North America R | JL003(JT) | Lobelia | siphilitica | OM263173 | OM263088 | ||
South America S | Ra s.n.2 | Burmeistera | crispiloba | OM262930 OM262931 | OM263042 | ||
South America S | Lu15078 | Centropogon | comosus | OM262932 OM262933 | OM263119 | OM263043 | |
South America S | JL005(JT) | Lobelia | bridgesii | OM262960 OM262961 | OM263143 | OM263058 | |
South America S | JL006(JT) | Lobelia | polyphylla | OM263164 OM263165 | OM263078 | ||
South America S | JL004(JT) | Lobelia | tupa | OM263012 OM263013 | OM263178 OM263179 | ||
Australasia T | RBGK2368 | Hypsela | Reniformis | OM262942 | OM263129 | ||
Australasia T | A9820 | Isotoma | gulliveri | OM262944 OM262945 | OM263132 | ||
Australasia T | K5237 | Isotoma | hypocrateriformis | OM262943 | OM263133 | OM263134 | |
Australasia T | LI010(JT) | Lithotoma | axillaris | OM263130 | OM263051 | ||
Australasia T | W5440 | Lithotoma | petraea | OM262954 | OM263131 | OM263052 | |
Australasia T | K5024A | Lobelia | macrodon | OM262985 | OM263072 | OM263071 | |
Australasia T | Ck2245 | Lobelia | pratioides | OM262993 | OM263166 | OM263077 | |
Australasia T | K5027 | Lobelia | roughii | OM262999 | OM263167 | OM263085 | |
Australasia T | K2369 | Pratia | arenaria | OM262950 OM262951 | OM263187 | ||
Australasia T | W5265 | Pratia | gelida | OM262952 | OM263188 | ||
Australasia T | A5357 | Pratia | pedunculata | OM262953 | OM263189 | OM263100 | |
Giants U | NTBG970260 | Apetahia | longistigmata | OM262928 OM262929 | OM263116 OM263117 | ||
Giants U | 4561(CM) | Brighamia | insignis | OM262905 OM262906 | OM263118 | OM263040 OM263041 | |
Giants U | 6799(CM) | Clermontia | micrantha | OM263120 | OM263044 | ||
Giants U | 7011 (CM) | Clermontia | persicifolia | OM262934 | OM263121 | OM263045 | |
Giants U | 1754(CM) | Cyanea | acuminata | OM262937 OM262938 | OM263122 | OM263046 | |
Giants U | K2375 | Cyanea | leptostegia | OM262939 OM262940 | |||
Giants U | 2452(CM) | Cyanea | superba | OM262941 | OM263123 OM263124 | ||
Giants U | 5416(CM) | Delissea | rhytidosperma | OM262896 OM262897 OM262903 OM262904 | OM263125 OM263126 | OM263047 OM263048 | |
Giants U | 3835(CM) | Delissea | subcordata | OM262901 OM262902 | OM263127 OM263128 | OM263049 | |
Giants U | K706 | Lobelia | aberdarica | OM262955 OM262956 | OM263135 OM263136 | OM263053 | |
Giants U | K731 | Lobelia | bambuseti | OM263138 OM263139 | OM263054 | ||
Giants U | K220 | Lobelia | bequaertii | OM262957 OM262959 | OM263141 OM263142 | OM263056 | |
Giants U | K802 | Lobelia | burttii | OM263144 OM263145 | OM263059 | ||
Giants U | M2085 | Lobelia | columnaris | OM262966 OM262967 | OM263147 OM263148 | ||
Giants U | K2353 | Lobelia | doniana | OM262900 | OM263149 OM263150 | OM263064 | |
Giants U | K118 | Lobelia | giberroa | OM262971 OM262972 | OM263153 | ||
Giants U | K698 | Lobelia | gregoriana | OM262974 OM262975 | |||
Giants U | K2381 | Lobelia | kauaensis | OM262898 OM262899 | OM263156 | ||
Giants U | K3522 | Lobelia | longisepala | OM262981 | OM263069 OM263096 | ||
Giants U | K623 | Lobelia | lukwangulensis | OM262982 OM262983 OM262984 | OM263158 | OM263093 | |
Giants U | K426 | Lobelia | mildbraedii | OM263160 | |||
Giants U | K619 | Lobelia | morogoroensis | OM262986 | OM263074 | ||
Giants U | NTBG910521 | Lobelia | niihauensis | OM262990 | OM263162 | ||
Giants U | 7162(CM) | Lobelia | oahuensis | OM263163 | |||
Giants U | K610 | Lobelia | sancta | OM263001 | OM263168 OM263169 | OM263086 | |
Giants U | RBGK5627 | Lobelia | sessilifolia | OM263170 OM263171 | |||
Giants U | K120 | Lobelia | stuhlmannii | OM263003 OM263004 | OM263174 | ||
Giants U | K689 | Lobelia | telekii | OM263005 OM263006 | |||
Giants U | K876 | Lobelia | thuliniana | OM263008 OM263009 | OM263175 OM263176 | ||
Giants U | 4097(CM) | Lobelia | villosa | OM263015 OM263015 OM263022 | OM263181 OM263182 | OM263095 | |
Giants U | K262 | Lobelia | wollastonii | OM263018 OM263019 | OM263183 OM263184 | ||
Giants U | K2379 | Lobelia | yuccoides | OM263020 OM263021 | OM263185 OM263186 | ||
Giants U | 4887(CM) | Trematolobelia | kauaiensis | OM263029 OM263031 | |||
Giants U | 4764(CM) | Trematolobelia | macrostachys | OM263030 OM263032 | OM263190 OM263191 | OM263103 | |