Fig. 4

P. dumerilii multimodal atlases. On the top row, five illustrative examples for the ProSPr gene expression atlases at different stages, showing the expression for the genes pax6 in red and gata123 in green. Their co-expression is shown in black. These are sum-projections for the full body from a ventral view (anterior up). On the bottom row, in left–right order: representation of single-cell rna sequencing and spatial mapping to the 48hpf gene expression atlas [61]; reconstructed neurons in the 3dpf P. dumerilii connectome, colored by cell type (the background is a graph representation of such connectome, where nodes represent cells and edges represent synaptic connections) [77, 95]; 2D section of the multimodal cellular atlas for the 6dpf P. dumerilii larva [102] showing the expression of the same genes as the top row, the segmentation of the muscles in cyan, and the segmentation of the chromatin in each nuclei