Way JC, Chalfie M: mec-3, a homeobox-containing gene that specifies differentiation of the touch receptor neurons in C. elegans. Cell. 1988, 54: 5-16. 10.1016/0092-8674(88)90174-2.
Article
CAS
PubMed
Google Scholar
Freyd G, Kim SK, Horvitz HR: Novel cysteine-rich motif and homeodomain in the product of the Caenorhabditis elegans cell lineage gene lin-11. Nature. 1990, 344: 876-879. 10.1038/344876a0.
Article
CAS
PubMed
Google Scholar
Karlsson O, Thor S, Norberg T, Ohlsson H, Edlund T: Insulin gene enhancer binding protein Isl-1 is a member of a novel class of proteins containing both a homeo- and a Cys-His domain. Nature. 1990, 344: 879-882. 10.1038/344879a0.
Article
CAS
PubMed
Google Scholar
Hobert O, Westphal H: Functions of LIM-homeobox genes. Trends Genet. 2000, 16: 75-83. 10.1016/S0168-9525(99)01883-1.
Article
CAS
PubMed
Google Scholar
Shirasaki R, Pfaff SL: Transcriptional codes and the control of neuronal identity. Annu Rev Neurosci. 2002, 25: 251-281. 10.1146/annurev.neuro.25.112701.142916.
Article
CAS
PubMed
Google Scholar
Srivastava M, Larroux C, Lu DR, Mohanty K, Chapman J, Degnan BM, Rokhsar DS: Early evolution of the LIM homeobox gene family. BMC Biol. 2010, 8: 4-10.1186/1741-7007-8-4.
Article
PubMed Central
PubMed
Google Scholar
Kadrmas JL, Beckerle MC: The LIM domain: from the cytoskeleton to the nucleus. Nat Rev Mol Cell Biol. 2004, 5: 920-931. 10.1038/nrm1499.
Article
CAS
PubMed
Google Scholar
Gill GN: Decoding the LIM development code. Trans Am Clin Climatol Assoc. 2003, 114: 179-189.
PubMed Central
PubMed
Google Scholar
Way JC, Chalfie M: The mec-3 gene of Caenorhabditis elegans requires its own product for maintained expression and is expressed in three neuronal cell types. Genes Dev. 1989, 3: 1823-1833. 10.1101/gad.3.12a.1823.
Article
CAS
PubMed
Google Scholar
Hobert O, D'Alberti T, Liu Y, Ruvkun G: Control of neural development and function in a thermoregulatory network by the LIM homeobox gene lin-11. J Neurosci. 1998, 18: 2084-2096.
CAS
PubMed
Google Scholar
Shawlot W, Behringer RR: Requirement for Lim1 in head-organizer function. Nature. 1995, 374: 425-430. 10.1038/374425a0.
Article
CAS
PubMed
Google Scholar
Sheng HZ, Bertuzzi S, Chiang C, Shawlot W, Taira M, Dawid I, Westphal H: Expression of murine Lhx5 suggests a role in specifying the forebrain. Dev Dyn. 1997, 208: 266-277. 10.1002/(SICI)1097-0177(199702)208:2<266::AID-AJA13>3.0.CO;2-1.
Article
CAS
PubMed
Google Scholar
Zhao Y, Sheng HZ, Amini R, Grinberg A, Lee E, Huang S, Taira M, Westphal H: Control of hippocampal morphogenesis and neuronal differentiation by the LIM homeobox gene Lhx5. Science. 1999, 284: 1155-1158. 10.1126/science.284.5417.1155.
Article
CAS
PubMed
Google Scholar
Yasuoka Y, Kobayashi M, Kurokawa D, Akasaka K, Saiga H, Taira M: Evolutionary origins of blastoporal expression and organizer activity of the vertebrate gastrula organizer gene lhx1 and its ancient metazoan paralog lhx3. Development. 2009, 136: 2005-14. 10.1242/dev.028530.
Article
CAS
PubMed
Google Scholar
Satou Y, Imai KS, Satoh N: Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos. Development. 2001, 128: 3559-3570.
CAS
PubMed
Google Scholar
Wang Y, Zhang PJ, Yasui K, Saiga H: Expression of Bblhx3, a LIM-homeobox gene, in the development of amphioxus Branchiostoma belcheri tsingtauense. Mech Dev. 2002, 117: 315-319. 10.1016/S0925-4773(02)00197-1.
Article
CAS
PubMed
Google Scholar
Perea-Gomez A, Shawlot W, Sasaki H, Behringer RR, Ang S: HNF3beta and Lim1 interact in the visceral endoderm to regulate primitive streak formation and anterior-posterior polarity in the mouse embryo. Development. 1999, 126: 4499-4511.
CAS
PubMed
Google Scholar
Benveniste RJ, Thor S, Thomas JB, Taghert PH: Cell type-specific regulation of the Drosophila FMRF-NH2 neuropeptide gene by Apterous, a LIM homeodomain transcription factor. Development. 1998, 125: 4757-4765.
CAS
PubMed
Google Scholar
Lundgren SE, Callahan CA, Thor S, Thomas JB: Control of neuronal pathway selection by the Drosophila LIM homeodomain gene apterous. Development. 1995, 121: 1769-1773.
CAS
PubMed
Google Scholar
Hobert O, Mori I, Yamashita Y, Honda H, Ohshima Y, Liu Y, Ruvkun G: Regulation of interneuron function in the C. elegans thermoregulatory pathway by the ttx-3 LIM homeobox gene. Neuron. 1997, 19: 345-357. 10.1016/S0896-6273(00)80944-7.
Article
CAS
PubMed
Google Scholar
Thor S, Andersson SG, Tomlinson A, Thomas JB: A LIM-homeodomain combinatorial code for motor-neuron pathway selection. Nature. 1999, 397: 76-80. 10.1038/16275.
Article
CAS
PubMed
Google Scholar
Bhati M, Lee C, Nancarrow AL, Lee M, Craig VJ, Bach I, Guss JM, Mackay JP, Matthews JM: Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes. EMBO J. 2008, 27: 2018-29. 10.1038/emboj.2008.123.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tosney KW, Hotary KB, Lance-Jones C: Specifying the target identity of motoneurons. Bioessays. 1995, 17: 379-382. 10.1002/bies.950170503.
Article
CAS
PubMed
Google Scholar
Curtiss J, Heilig JS: Establishment of Drosophila imaginal precursor cells is controlled by the Arrowhead gene. Development. 1995, 121: 3819-3828.
CAS
PubMed
Google Scholar
Sagasti A, Hobert O, Troemel ER, Ruvkun G, Bargmann CI: Alternative olfactory neuron fates are specified by the LIM homeobox gene lim-4. Genes Dev. 1999, 13: 1794-1806. 10.1101/gad.13.14.1794.
Article
PubMed Central
CAS
PubMed
Google Scholar
Grigoriou M, Tucker AS, Sharpe PT, Pachnis V: Expression and regulation of Lhx6 and Lhx7, a novel subfamily of LIM homeodomain encoding genes, suggests a role in mammalian head development. Development. 1998, 125: 2063-2074.
CAS
PubMed
Google Scholar
Thor S, Thomas JB: The Drosophila islet gene governs axon pathfinding and neurotransmitter identity. Neuron. 1997, 18: 397-409. 10.1016/S0896-6273(00)81241-6.
Article
CAS
PubMed
Google Scholar
Li Y, Zhang Y, He B, Wang Y, Yuan Z, Yuan W, Liao P, Deng Y, Xiao J, Zhu C, Wang Y, Wu X, Liu M: Cloning and expression of a novel human gene, Isl-2, encoded a LIM-homeodomain protein. Mol Biol Rep. 2007, 34: 19-26. 10.1007/s11033-006-9003-0.
Article
PubMed
Google Scholar
Pfaff SL, Mendelsohn M, Stewart CL, Edlund T, Jessell TM: Requirement for LIM homeobox gene Isl1 in motor neuron generation reveals a motor neuron-dependent step in interneuron differentiation. Cell. 1996, 84: 309-320. 10.1016/S0092-8674(00)80985-X.
Article
CAS
PubMed
Google Scholar
Kikuchi Y, Segawa H, Tokumoto M, Tsubokawa T, Hotta Y, Uyemura K, Okamoto H: Ocular and cerebellar defects in zebrafish induced by overexpression of the LIM domains of the islet-3 LIM/homeodomain protein. Neuron. 1997, 18: 369-382. 10.1016/S0896-6273(00)81239-8.
Article
CAS
PubMed
Google Scholar
Hobert O, Tessmar K, Ruvkun G: The Caenorhabditis elegans lim-6 LIM homeobox gene regulates neurite outgrowth and function of particular GABAergic neurons. Development. 1999, 126: 1547-1562.
CAS
PubMed
Google Scholar
Giraldez F: Regionalized organizing activity of the neural tube revealed by the regulation of lmx1 in the otic vesicle. Dev Biol. 1998, 203: 189-200. 10.1006/dbio.1998.9023.
Article
CAS
PubMed
Google Scholar
Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS: The Trichoplax genome and the nature of placozoans. Nature. 2008, 454: 955-60. 10.1038/nature07191.
Article
CAS
PubMed
Google Scholar
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS: The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 2010, 466: 720-6. 10.1038/nature09201.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sakarya O, Armstrong K, Adamska M, Adamski M, Wang I-F, Tidor B, Degnan BM, Oakley TH, Kosik KS: A post-synaptic scaffold at the origin of the animal kingdom. PloS one. 2007, 2: e506-10.1371/journal.pone.0000506.
Article
PubMed Central
PubMed
Google Scholar
Alié A, Manuel M: The backbone of the post-synaptic density originated in a unicellular ancestor of choanoflagellates and metazoans. BMC Evol Biol. 2010, 10: 34-10.1186/1471-2148-10-34.
Article
PubMed Central
PubMed
Google Scholar
Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SHD, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G: Broad phylogenomic sampling improves resolution of the animal tree of life. Nature. 2008, 452: 745-9. 10.1038/nature06614.
Article
CAS
PubMed
Google Scholar
Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguna J, Bailly X, Jondelius U, Wiens M, Muller WE, Seaver E, Wheeler WC, Martindale MQ, Giribet G, Dunn CW: Assessing the root of bilaterian animals with scalable phylogenomic methods. Proc Biol Sci. 2009, 276: 4261-4270. 10.1098/rspb.2009.0896.
Article
PubMed Central
PubMed
Google Scholar
Medina M, Collins AG, Silberman JD, Sogin ML: Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proc Natl Acad Sci USA. 2001, 98: 9707-9712. 10.1073/pnas.171316998.
Article
PubMed Central
CAS
PubMed
Google Scholar
Collins AG: Evaluating multiple alternative hypotheses for the origin of Bilateria: an analysis of 18S rRNA molecular evidence. Proc Nat Acad Sci USA. 1998, 95: 15458-15463. 10.1073/pnas.95.26.15458.
Article
PubMed Central
CAS
PubMed
Google Scholar
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS: Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science. 2007, 317: 86-94. 10.1126/science.1139158.
Article
CAS
PubMed
Google Scholar
Hyman LH: The invertebrates: Protozoa through Ctenophora. 1940, New York; McGraw-Hill Book Company, Inc
Google Scholar
Philippe H, Derelle R, Lopez P, Pick K, Borchiellini C, Boury-Esnault N, Vacelet J, Renard E, Houliston E, Quéinnec E, Da Silva C, Wincker P, Le Guyader H, Leys S, Jackson DJ, Schreiber F, Erpenbeck D, Morgenstern B, Wörheide G, Manuel M: Phylogenomics revives traditional views on deep animal relationships. Curr Biol. 2009, 19: 706-712. 10.1016/j.cub.2009.02.052.
Article
CAS
PubMed
Google Scholar
Edgecombe GD, Giribet G, Dunn CW, Hejnol A, Kristensen RM, Neves RC, Rouse GW, Worsaae K, Sørensen MV: Higher-level metazoan relationships: recent progress and remaining questions. Organisms Diversity & Evolution. 2011
Google Scholar
Ryan JF, Pang K, Mullikin JC, Martindale MQ, Baxevanis AD: The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. EvoDevo. 2010, 1: 9-10.1186/2041-9139-1-9.
Article
PubMed Central
PubMed
Google Scholar
Pang K, Ryan JF, Mullikin JC, Baxevanis AD, Martindale MQ: Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi. EvoDevo. 2010, 1: 10-10.1186/2041-9139-1-10.
Article
PubMed Central
CAS
PubMed
Google Scholar
Reitzel AM, Pang K, Ryan JF, Mullikin JC, Martindale MQ, Baxevanis AD, Tarrant AM: Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?. EvoDevo. 2011, 2: 3-10.1186/2041-9139-2-3.
Article
PubMed Central
CAS
PubMed
Google Scholar
Letunic I, Doerks T, Bork P: SMART 6: recent updates and new developments. Nucleic Acids Res. 2009, 37: D229-232. 10.1093/nar/gkn808.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR: The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes : evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol. 2006, 1-20.
Google Scholar
Larroux C, Luke GN, Koopman P, Rokhsar DS, Shimeld SM, Degnan BM: Genesis and expansion of metazoan transcription factor gene classes. Mol Biol Evol. 2008, 25: 980-996. 10.1093/molbev/msn047.
Article
CAS
PubMed
Google Scholar
Horridge GA: Presumed photoreceptive cilia in a ctenophore. Quart J Microsc Sci. 1964, 105: 311-317.
Google Scholar
Pang K, Ryan JF, Mullikin JC, Baxevanis AD, Martindale MQ: TGF beta pathway. EvoDevo.
Tamm SL: Ctenophora. Electrical conduction and behaviour in "simple" invertebrates. Edited by: Shelton GAB. 1982, Oxford: Oxford University Press, 266-358.
Google Scholar
Bachy I, Vernier P, Retaux S: The LIM-homeodomain gene family in the developing Xenopus brain: conservation and divergences with the mouse related to the evolution of the forebrain. J Neurosci. 2001, 21: 7620-7629.
CAS
PubMed
Google Scholar
Yamada A, Pang K, Martindale MQ, Tochinai S: Surprisingly complex T-box gene complement in diploblastic metazoans. Evol Dev. 2007, 9: 220-230. 10.1111/j.1525-142X.2007.00154.x.
Article
CAS
PubMed
Google Scholar
Pang K, Martindale MQ: Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi. Dev Genes Evol. 2008, 218: 307-319. 10.1007/s00427-008-0222-3.
Article
CAS
PubMed
Google Scholar
Layden MJ, Meyer NP, Pang K, Seaver EC, Martindale MQ: Expression and phylogenetic analysis of the zic gene family in the evolution and development of metazoans. EvoDevo. 2010, 1: 12-10.1186/2041-9139-1-12.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chun C: Die Ctenophoren des Golfes von Neapel und der angrenzenden Meeres-Abschnitte. Fauna und Flora des Golfes Neapel. 1880, Leipzig: Engelmann, 1: 1-311.
Google Scholar
Hertwig R: Ueber den Bau der Ctenophoren. 1880, Jena: G. Fischer
Google Scholar
Samassa P: Zur Histologie der Ctenophoren. Arch mikr Anat. 1892, 40: 157-242. 10.1007/BF02954492.
Article
Google Scholar
Bethe A: Der subepitheliale Nervenplexus der Ctenophoren. Biol Zbl. 1895, 15: 140-145.
Google Scholar
Heider K: Über das Nervensystem von Beroe ovata. Nachrichten der Gesellschaft der Wissenschaften zu Göttingen, Math.-phys. KI. Göttingen: Vandenhoeck & Ruprecht. 1927
Google Scholar
Horridge GA, Mackay B: Naked axons and symmetrical synapses in coelenterates. J Cell Sci. 1962, 3: 531-541.
Google Scholar
Horridge GA, Mackay B: Neurociliary synapses in Pleurobrachia (Ctenophora). J Cell Sci. 1964, 3: 163-174.
Google Scholar
Horridge GA: Relations between nerves and cilia in Ctenophores. Am Zool. 1965, 5: 357-375.
Article
CAS
PubMed
Google Scholar
Hernandez-Nicaise ML: The nervous system of ctenophores. I. Structure and ultrastructure of the epithelial nerve-nets. Z Zellforsch Mikrosk Anat. 1973, 137: 223-250. 10.1007/BF00307432.
Article
CAS
PubMed
Google Scholar
Hernandez-Nicaise ML: The nervous system of ctenophores. II. The nervous elements of the mesoglea of beroids and cydippids. Z Zellforsch Mikrosk Anat. 1973, 143: 117-133. 10.1007/BF00307455.
Article
CAS
PubMed
Google Scholar
Hernandez-Nicaise ML: The nervous system of ctenophores. III. Ultrastructure of synapses. J Neurocytol. 1973, 2: 249-263. 10.1007/BF01104029.
Article
CAS
PubMed
Google Scholar
Hernandez-Nicaise ML: Système nerveux et intégration chez. les ctenaires; etude ultrastructurale et comportementale. 1974, Lyon, France: Univ. Claude Bernard
Google Scholar
Tamm S, Tamm SL: A giant nerve net with multi-effector synapses underlying epithelial adhesive strips in the mouth of Beroe (Ctenophora). J Neurocytol. 1995, 24: 711-723. 10.1007/BF01179820.
Article
CAS
PubMed
Google Scholar
Tamm SL, Tamm S: Novel bridge of axon-like processes of epithelial cells in the aboral sense organ of ctenophores. J Morphol. 2002, 254: 99-120. 10.1002/jmor.10019.
Article
PubMed
Google Scholar
Jager M, Chiori R, Alié A, Dayraud C, Quéinnec E, Manuel M: New insights on ctenophore neural anatomy: immunofluorescence study in Pleurobrachia pileus (Müller, 1776). J Exp Zool B Mol Dev Evol. 2011, 316B: 171-187. 10.1002/jez.b.21386.
Article
PubMed
Google Scholar
Fol H: Ein Beitrag zur Anatomie und Entwickelungsgeschichte. einiger Rippenquallen. 1869
Google Scholar
Horridge GA: Recent studies on the Ctenophora. Coelenterate Biology. Edited by: Muscatine L, Lenhoff HM. 1974, NewYork: Academic Press, 439-468.
Google Scholar
Hernandez-Nicaise ML: Ctenophora. Biology of the Iintegument, Volume 1: Invertebrates. Edited by: Bereiter-Hahn J, Matoltsy AG, Richards KS. 1984, Berlin Heidelberg, New York: Springer, 96-111.
Chapter
Google Scholar
Ward WW: Extraction of renilla-type luciferin from the calcium-activated photoproteins aequorin, mnemiopsin, and berovin. Proc Nat Acad Sci USA. 1975, 72: 2530-2534. 10.1073/pnas.72.7.2530.
Article
PubMed Central
CAS
PubMed
Google Scholar
Anctil M: Ultrastructure of the luminescent system of the ctenophore Mnemiopsis leidyi. Cell Tissue Res. 1985, 242: 333-340.
Article
Google Scholar
Schnitzler CE, Pang K, Powers ML, Reitzel AM, Ryan JF, Simmons DK, Park M, Gupta J, Brooks SY, Blakesley RW, Haddock HSD, Martindale MQ, Baxevanis AD: Bioluminescence and the evolution of photoproteins: A ctenophore genome lights the way.
Koch JB, Ryan JF, Baxevanis AD: The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization. Plos One.
Pang K, Martindale MQ: Comb jellies (Ctenophora): a model for basal metazoan evolution and development. Emerging Model Organisms. Edited by: Crotty DA, Gann A. 2009, Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1: 167-195.
Google Scholar
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ: Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009, 25: 1189-1191. 10.1093/bioinformatics/btp033.
Article
PubMed Central
CAS
PubMed
Google Scholar
Stamatakis A: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006, 22: 2688-2690. 10.1093/bioinformatics/btl446.
Article
CAS
PubMed
Google Scholar
Abascal F, Zardoya R, Posada D: ProtTest: Selection of best-fit models of protein evolution. Bioinformatics. 2005, 21: 2104-2105. 10.1093/bioinformatics/bti263.
Article
CAS
PubMed
Google Scholar
Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003, 19: 1572-1574. 10.1093/bioinformatics/btg180.
Article
CAS
PubMed
Google Scholar