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Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo
EvoDevo volume 4, Article number: 29 (2013)
Polyclad flatworms are an early branching clade within the rhabditophoran Platyhelminthes. They provide an interesting system with which to explore the evolution of development within Platyhelminthes and amongst Spiralia (Lophotrochozoa). Unlike most other flatworms, polyclads undergo spiral cleavage (similar to that seen in some other spiralian taxa), they are the only free-living flatworms where development via a larval stage occurs, and they are the only flatworms in which embryos can be reared outside of their protective egg case, enabling embryonic manipulations. Past work has focused on comparing early cleavage patterns and larval anatomy between polyclads and other spiralians. We have selected Maritigrella crozieri, the tiger flatworm, as a suitable polyclad species for developmental studies, because it is abundant and large in size compared to other species. These characteristics have facilitated the generation of a transcriptome from embryonic and larval material and are enabling us to develop methods for gene expression analysis and immunofluorescence techniques. Here we give an overview of M. crozieri and its development, we highlight the advantages and current limitations of this animal as a potential evo-devo model and discuss current lines of research.
Platyhelminthes, or flatworms, are a group of soft-bodied, usually hermaphroditic invertebrates especially renowned for their neoblast stem cell system and their pronounced ability to regenerate [1, 2]. They are members of the Spiralia, and, with recent evidence supporting the exclusion of the Acoelomorpha and Xenoturbellida (see, for example, ), they comprise two monophyletic groups: the Catenulida and the Rhabditophora [4, 5], with the latter including the Polycladida.
The Polycladida are among the earliest branching Platyhelminthes [6–9]. They sport a highly branched gut (the name-giving feature of the Polycladida), and they have retained certain developmental characteristics common to other spiralian taxa, such as endolecithal eggs and (at least partially) spiral cleavage [10–12]. Embryonic development features a prominent mesentoblast and epibolic gastrulation. Whereas all other free-living flatworms are direct developers, both direct and indirect development is known in polyclads. Indirect development typically features a spherical, usually eight-lobed, three-eyed Müller’s larva. Other larval forms include a four-lobed, two-eyed Goette’s larva and a dorsoventrally flattened, eight-lobed, twelve-eyed Kato’s larva.
All cotylean species studied feature a Müller’s larva with eight lobes and three eyes, with three listed modifications involving intracapsular metamorphosis and sometimes a reduced number of lobes and eyes. In acotyleans, predominantly direct development occurs, but Müller’s larvae, Goette’s larvae with four lobes and usually two eyes, and dorsoventrally flattened Kato’s larvae with eight lobes and twelve eyes are also known (summarized in , Table 1). In several cases, more than one developmental type has been described in a genus, sometimes even in the same species. This may be partly attributed to the difficulty of correct species determination in many acotyleans, which is also reflected in frequent taxonomic rearrangements, such as in the cases of Hoploplana inquilina (formerly Planocera inquilina), Stylochus ellipticus (formerly Planocera elliptica) and Stylochoplana maculata (formerly Stylochus maculatus).
Adult polyclads are extremely dorsoventrally flattened, with body lengths typically in the centimetre range. They are subdivided into two groups characterized by the presence (Cotylea) or absence (Acotylea) of a cup-shaped ventral sucker located along the midline of the body and posterior to the genital openings [21, 36]. Although larval and juvenile stages may be found swimming in the water column, adults are usually found on the substrate . Polyclads are capable of regeneration, but that does not include the regeneration of the head, with the exception of the acotylean Cestoplana, in which pieces cut just posterior of the brain are able to regenerate the brain .
Herein we highlight the polyclad Maritigrella crozieri as a candidate model for evo-devo. We review past work done on this species, give a preview of new experimental data and discuss the most relevant scientific topics and future directions.
Maritigrella crozieri, a polyclad species for evo-devo
Despite the Lophotrochozoa being one of the three major branches of bilaterians, very few representatives of the Lophotrochozoa are found amongst classical experimental models. Emerging new model molluscs, annelids and platyhelminths have been pushed forward recently to fill this taxonomic gap . Among these, the principal platyhelminth models are triclads, which, despite being valuable models for stem cell and regeneration biology, have a derived mode of development, making comparative studies difficult (; see also review in ).
We have chosen M. crozieri as a suitable polyclad representative for evolutionary and developmental studies. The major advantages of this species are its ease of collection, its readily observable spiral cleavage, its biphasic life cycle with an eight-lobed Müller’s larva and its large size with many eggs, which can be obtained and raised without eggshells.
Description of Maritigrella crozieri
M. crozieri was first mentioned in the literature as Pseudoceros sp. , and the formal species description gives the same species the name Pseudoceros crozieri. Newman et al.  reclassified the species as a euryleptid belonging to the genus Maritigrella, based on the anterior tubular pharynx and eye clusters at the base of the elongate tentacles (Figures 1 and 2).
On the dorsal surface, it has an irregular pattern of black stripes on a white to orange background that inspired the name for the genus  (Figures 1A through 1C, 2B and 2D through 2G). The eyes are located in two broad wedges, merging dorsal to the brain (cerebral eyes) and at both the ventral and dorsal bases of the tentacles (tentacular eyes, Figure 1C and 1D). We have counted more than 90 cerebral eyes in an individual (Figure 1C), which is slightly higher than the number (about 70) reported by Newman et al. . The animal’s maximum reported length was up to 30 mm  and 31.3 ± 2.7 mm (n = 20) . We have since found several significantly larger individuals, with the greatest measured length being 56 mm (Figure 1B).
Externally, M. crozieri can be distinguished from its mostly stripy congeners by its distinct dorsal pigmentation, its size and its geographical distribution (see [43–46]). We amend the species description  to “margin with irregular banding of opaque white, sometimes with a semitransparent outer white band (Figure 2G) and orange pigment speckles (Figure 3D),” as we have never observed an outer orange band in our specimens, nor have we identified it in the figures published by Newman et al. . The base of the tentacles is orange, followed by a black stripe and a white tip (, Figure 1C).
The male genital opening is anterior to the female opening, with the sucker being situated behind them (, Figure 1E). Whereas Hyman  stated that “there is no stylet” in later works the stylet (the sclerotised tip of the male copulatory organ) was found to be present and to be about 130 μm long . Insemination has been reported to occur hypodermically by stabbing . In our observations, animals were not stabbing each other, but rather gently depositing sperm on the dorsal surface of their partners with their stylet (Figure 2E through 2G; see also Additional file 1). Histological sections of the spermatophores on or in the epidermis are required for ascertaining dermal impregnation instead of hypodermic insemination .
Maritigrella crozieri collection and prey preference
The type locality of M. crozieri is Bermuda [41, 42], and animals have subsequently been collected off mainland Florida and the Florida Keys [12, 13, 43, 47]. All our sampling efforts were concentrated on the Florida Keys, and we found animals (from west to east) on Sugarloaf Key, Cudjoe Key, Summerland Key, Ramrod Key, Big Pine Key, No Name Key, Long Key and Upper Matecumbe Key (Figure 2A). While most animals could be found on the ascidian Ecteinascidia turbinata (Figure 2B through 2D), specimens of M. crozieri were occasionally encountered on mangrove roots without Ecteinascidia or on the shallow ocean floor.
M. crozieri shows a strong preference for the orange ascidian E. turbinata as a food source [41, 43]. We occasionally found animals with a purple gut instead of an orange gut, indicating other prey items. Crozier  identified Ascidia curvata and Phallusia nigra (formerly Ascidia atra) as other possible prey for M. crozieri and speculated that the food specificity of adult specimens of M. crozieri may be an acquired taste of the juvenile, depending on which ascidian species the juvenile had settled. Newman et al. , on the other hand, claim that M. crozieri feeds exclusively on E. turbinata.
Our observations suggest that adult M. crozieri are unable to swim. To find out how adult M. crozieri can reach ascidian colonies on dangling mangrove roots, we suspended E. turbinata colonies on string in the centre of saltwater tanks (Figure 4; see Additional file 2). We observed individuals moving up the side of the tank and floating under the water surface before curling up to break the water surface tension and descending down onto the ascidians. We hypothesise that the Müller’s larvae of M. crozieri undergo metamorphosis before they reach the ascidians and that metamorphosed juveniles could use the same technique as adults to reach the E. turbinata prey.
Laboratory cultures and development
Specimens of M. crozieri were able to survive up to 143 days without feeding, shrinking significantly during this time of starvation (Figure 1B, inset) at room temperature in 3.5% artificial seawater (hw-Meersalz professional and hw-Marinemix professional; Wiegandt GmbH, Krefeld, Germany).
The egg-laying period in the laboratory lasts for more than 3 months (107 days), showing that animals under ongoing starvation are still able to produce and lay eggs. The great majority of eggs are laid during the first 2 months of captivity. Gravid M. crozieri lay eggs directly on the tunic of E. turbinata in the wild and on the side of their container, or even under the water surface, when in captivity. Each embryo is contained within a thick spherical capsule, which collectively form a compact monolayer (egg plate) of 50 to 1,000 capsules. Importantly for experimental manipulation of the embryos, puncturing the paired uteri of gravid adults with a dissecting needle releases viable fertilised eggs devoid of their capsules (see ). If raised in a gelatin-coated petri dish in filtered seawater treated with antibiotics, these naked eggs develop in the same way as their encapsulated counterparts .
Embryonic development of M. crozieri has been described in detail by Rawlinson . First divisions show a typical quartet spiral cleavage mode (Figure 5) with equal blastomere size. Müller’s larvae hatch after about 8 days with three eyes (two cerebral eyes and one epidermal eye) and eight lobes (Figures 6, 7 and 8). The epidermis is completely covered by short cilia and includes rhabdite cells towards the anterior and posterior poles (Figure 6L). Larvae show a well-developed ciliary band with longer cilia (Figures 6A through 6E, 6G, 6I, 7A through 7D, 7H, 8A through 8D, 8G and 8I) that follows along the eight protruding lobes. There is an apical organ with long cilia surrounded by a ring of flask-shaped glandular or neuronal cells  (Figures 6F, 6H, 6J, 6L, 8B, 8E and 8H). Very close to the apical organ, but shifted slightly dorsally, a bundle of longer cilia can be seen (Figure 8B and 8E). These cilia have not yet been described, and their significance is unknown so far. There is also a caudal cilium (posterior tuft) lying on the dorsal side of the posterior pole (Figures 6J, 6K, 6O, 8A, 8C, 8F and 8I). The mouth is on the ventral side (Figure 6C, 6G and 6J) and forms the single opening into the larva’s unbranched and ciliated blind gut . Although yolk granules are still present in endodermal cells when they hatch (Figure 6N), the larvae of M. crozieri have been reported to feed on phytoplankton . Like the trochophore larvae of the annelid Platynereis, larvae of Maritigrella swim in a right-handed helical motion in the water column and are typically positively phototactic [12, 13] (Figure 6M, Additional file 3 and Additional file 4). Larvae kept at 20°C survived for more than 5 weeks (37 days) after hatching, in contrast to the findings of Johnson and Forward , who reported 3 weeks as the end of the larval life span of M. crozieri. During starvation, the larval lobes get resorbed continuously, so that the larvae eventually resemble a slightly elongated sphere (Figure 6O).
Genome and transcriptome
The haploid genome size (1C) of M. crozieri is estimated to be about 2.5 Gb (2,511.2 ± 35.8 Mb; n = 3) by flow cytometry (J Spencer Johnston, personal communication), providing the first genome size information for a polyclad flatworm. Diploid genome sizes of 38 free-living flatworms were shown to have a considerable range between about 0.1 and 40 Gb, with an average of about 5 Gb , which corresponds very closely to M. crozieri’s diploid genome size.
We have extracted and sequenced RNA from embryonic and larval stages of M. crozieri. Using Trinity RNA-seq de novo assembly software , clustering of all contigs larger than 300 nucleotides resulted in 72,924 unigenes from among 128,196 isoforms (56.9%), and clustering of all contigs larger than 500 nucleotides resulted in 34,745 unigenes from among 77,383 isoforms (44.9%) (Table 2). Isoforms represent all valid transcripts (above a certain arbitrary threshold), and unigenes gather different isoforms (or splicing forms) of a gene into a cluster . The average length of all contigs is 807 bp, and the median length is 351 bp (Table 2), which demonstrates the high quality of the assembly. In a random subset of sequences, less than 1% of significant best BLAST hits were bacterial and viral sequences (Figure 9), which indicates a low level of contamination by these groups in the transcriptome. Only 8% of the sequences from the M. crozieri transcriptome recognize other flatworm sequences as the best BLAST hit (Figure 9), reflecting the necessity of further bioinformatics research within Platyhelminthes.
Regeneration and stem cells
The regenerative capacity of some flatworms has been known for two centuries  and is reliant on the neoblast stem cell system. Some flatworms can readily regenerate a head when cut into 100 pieces  or regenerate to a complete organism from only 1,500 cells . However, not all flatworms are able to regenerate all missing body parts or even to regenerate at all . The “polyclad rule for regeneration” was postulated as the ability to regenerate all parts of the body but the brain . This is true for all polyclads studied so far, with the notable exception of Cestoplana, which is able to regenerate its head from the posterior fragment when amputated just posterior to the brain . Although more than 10 acotylean polyclads have been observed to regenerate , only a single cotylean species, Thysanozoon brocchii, has been the subject of published regeneration studies [58, 59]. Herein we can report that M. crozieri (n = 3) is able to regenerate both laterally and posteriorly at room temperature (Figure 3), although regeneration in small animals that have not fed for weeks or months is slow and extensive regeneration studies are still outstanding.
Neoblasts are totipotent stem cells and the only proliferating cells in adult rhabditophoran flatworms [60, 61]. In the Rhabditophora, neoblasts are located exclusively in the mesenchymal space and at the base of the gastrodermis, but they are conspicuously absent in the epidermis . Migration of stem cells into the epidermis has been demonstrated for juvenile polyclads [62, 63]. Interestingly, in late embryos of Notocomplana humilis and Cycloporus japonicus, and even in the Müller’s larvae of the latter, mitoses were detected in the epidermis . In M. crozieri larvae, the first Müller’s larvae with successful bromodeoxyuridine (BrdU) labelling following the protocol given by Egger et al.  using 20-h BrdU incubation time, we could not detect proliferating cells (S-phase or mitotic) within the epidermis (see Figure 7E).
Regeneration in flatworms and stem cell research on them so far have been focused mainly on triclads and Macrostomum, but they are interesting topics to study in polyclads. In particular, the absence (as in triclads ) or presence (as in Macrostomum ) of proliferating cells within the regeneration blastema will help determine the ancestral mode of tissue repair in flatworms. Large polyclads such as M. crozieri are amenable to microsurgery, thereby allowing us to explore more precisely the limits of their regenerative capacity.
Hypotheses on phylogenetic relationships and character evolution
Among the metazoan phyla, many diverse groups have a biphasic life cycle in which they pass through a pelagic larval stage that gives rise to a benthic adult animal through metamorphosis. The presence of such larvae is patchily distributed, however, raising the question of their evolutionary origin. The biphasic life cycle could be an ancient characteristic of animals, homologous in those groups in which it is found and repeatedly lost in those groups that lack it; or it may have evolved repeatedly via convergent evolution as a similar adaptation to some consistent selective forces. This dilemma has not been resolved, and the origin of larvae remains the subject of intense debate (for review, see the opposing views of Raff  and Nielsen ).
The phylogenetic position and features of polyclad flatworms make them a valuable model with which to gain insight into the evolution of larval forms within the Spiralia. Although it has been argued that the existence of larvae in a single order of free-living platyhelminths points to its independent evolution in polyclads rather than repeated loss in most other flatworm clades , a basally branching position of the polyclads within platyhelminths allows it to be parsimoniously considered as a primitive character [8, 69]. Polyclad flatworms can exhibit a range of developmental modes even within the same genus (Table 1): direct development with benthic juvenile worms, intermediate development with ciliated larvae metamorphosing within their eggshells and indirect development with pelagic swimming larvae that metamorphose postembryonically. These larvae have been classified into three main types: Kato’s larval features resemble those of a modified juvenile, whereas ciliary bands and cephalic ganglia found in Goette’s and Müller’s larvae have been thought by some to resemble those of the nemertean pilidium larva . Others have suggested that the polyclad larva may be homologous to the trochophore larva .
The practical advantages and pioneering works on M. crozieri’s larva, together with the growing access to large-scale molecular, imaging and phylogenetic tools, will help to elucidate the evolution of larval forms and features. Evidence of homology of Müller’s larval characteristics with those of other spiralian larvae would hint at indirect development as the primitive platyhelminth and spiralian condition. On the other hand, the nonhomology of larval characteristics would suggest that similar larval forms can evolve repeatedly and independently.
Evolution of the gut
Development of a through gut in metazoans has been a critical innovation that provides efficient food-processing. Despite this importance, its evolution is still surprisingly enigmatic. Within Eumetazoa, blind guts without a separate anus are found in ctenophores and cnidarians, whereas most bilaterians typically develop a through gut with two distinct openings. Some notable exceptions exist within bilaterians, however, as some species develop only a blind gut. This is the case for Xenacoelomorpha, Ophiuroidea, some Brachiopoda, some Rotifera, some Gnathostomulida and almost all Platyhelminthes . Two scenarios can be envisioned to explain the presence of a blind gut in those animals: Either they retained a characteristic that was present in their stem group, or they secondarily lost an anus that was already present in their stem group.
The nested position of Platyhelminthes within spiralians (for example, ) suggests that a secondary loss of the anus in flatworms is the most parsimonious explanation. In support of this view, it has been suggested that a divergent developmental program could account for the absence of a through gut in Platyhelminthes. The most obvious example is found in polyclads whereby fourth-quartet macromeres (4A–4D), which give rise to endodermal structures in other spiralians, degenerate [10, 11, 71, 73]. Also, many of the genes found expressed along the anteroposterior axis of bilaterian guts are not expressed in the gut or were lost in triclads . Only one of the three ParaHox genes, xlox, is found in Schmidtea mediterranea and Schmidtea polychroa genomes, whereas gsx and cdx, as well as the T-box-containing gene brachyury, are missing . The extent of such a loss is less pronounced in the Macrostomida  and in the polyclad Discocelis tigrina, which are more basally branched within the Platyhelminthes, indicating that these genes were secondarily lost in triclads and cannot be related to the lack of an anus in almost all Platyhelminthes.
Whilst our attempts to identify in the transcriptome of M. crozieri homologs of brachyury and xlox have been unsuccessful so far, we found homologs of gsx and cdx (Additional file 5: Figure S1, and Additional file 6). Saló and colleagues  reported the absence of a gsx homolog but the presence of an xlox homolog in the polyclad Discocelis tigrina, but its sequence has never been published and therefore could not be compared with the sequences from our transcriptome. It will be important in future studies to determine in M. crozieri’s embryos and juveniles the presence and the expression of these as well as other gut-related genes to better understand the evolutionary origin of the Platyhelminthes’ blind gut.
Evolution of the nervous system and phototaxis
Many aspects of nervous system evolution remain elusive. One of them is the transition from the diffuse nervous system found in cnidarians to the centralised one found in most bilaterians [75, 76]. Although some studies suggest that centralisation and complex patterning of the nervous system in adult animals predates the protostome–deuterostome split [77, 78], others favour the idea that the urbilaterian possessed a far less complex nervous system [76, 79].
The relatively simple nervous system of invertebrate ciliated larvae has been proposed to be informative regarding the evolution of the central nervous system , possibly recapitulating a transitional form en route to a complex adult nervous system. Conserved gene expression and immunoreactivity in the neurogenic region of these larvae [81–84] may hint at a common evolutionary history. However, the disappearance of the larval apical organ and ciliary band nerves during metamorphosis [80, 85], and also the small number of markers or phyla investigated, make the evolutionary significance of those comparisons difficult to determine .
Whilst precise descriptions of the nervous system of Macrostomum lignano[2, 87] and Schmidtea mediterranea have already provided landmarks for juvenile and adult platyhelminth neuroanatomy, very little is known concerning platyhelminth larvae. In this respect, future studies on the nervous system of larval M. crozieri can provide an additional data set for determining the evolutionary significance of the nervous system of ciliated larvae.
Recent work on Platynereis dumerilii suggested that the phototactic behaviour of their larvae represent a paradigm for the evolution of the nervous system . Phototaxis in P. dumerilii larvae relies on the presence of pigmented photoreceptors that connect directly to a ciliated locomotor cell of the prototrochal ring. In sponges and cnidarians, phototaxis relies on single cells, which have both light-detecting and ciliary locomotory functions, whereas several specialised cooperating cells are found in P. dumerilii. The latter could represent an early step in an evolutionary complexification of neural circuitry and visual systems .
M. crozieri larvae provide direct access to further testing of this hypothesis. In an assay similar to the one previously used for P. dumerilii, the polyclad larvae behaved positively phototactic (Figure 6M, Additional file 3 and Additional file 4; see also ), and they possess, like larvae of Platynereis dumerilii, rhabdomeric pigmented eyespots that develop closely associated with the bilateral cephalic ganglia , allowing close comparison between larvae of these two species.
The nervous system of M. crozieri larvae has been investigated using standard neuronal markers . Expansion of this work with additional specific markers, such as neuropeptides, is warranted. Neuropeptides have an early evolutionary origin  and have been shown to be implicated in the control of swimming and settlement behaviour [90, 91]. The rich repertoire of neuropeptides found in Platynereis dumerilii, together with a microscopic registration technique [92, 93], have proven to be powerful tools to characterise and map individual neurons in a whole larva.
M. crozieri is especially amenable to similar approaches. The recently established transcriptome of M. crozieri allowed us to identify a number of conserved neuropeptide motifs, such as an AVRLIRLamide and a GVWSNDPWamide. Antibodies directed against the mature form of the neuropeptide show that distinct subsets of cells in M. crozieri are immunoreactive to these antibodies (Figure 7F and 7G; for a suitable staining protocol, see ). Determination of the extent of homology and specificity in development and nervous topology between M. crozieri and other spiralians will have repercussions on our understanding of neuronal evolution. The increased availability of neuropeptidomes in other larvae, such as the sea urchin [94, 95], and two recent global analyses of neuropeptide evolution in Metazoa [96, 97] should provide a solid comparison framework for all bilaterians.
M. crozieri’s large size at maturity facilitates the extraction of hundreds of naked embryos from the adult and also makes the collection of individuals from the field easier. Adult worms can be kept in the laboratory without food for a considerable time and still produce eggs. The larvae can be kept alive in the laboratory for weeks, although raising them to metamorphosis has not been achieved to date.
An embryonic and larval transcriptome has been sequenced and assembled and is currently being analysed and complemented by full-genome sequencing. These resources are facilitating obtaining genes of interest for in situ probe synthesis, among others. We are in the process of developing a protocol for whole-mount in situ hybridization for M. crozieri. Whole-mount immunofluorescent staining works well  (Figure 7E through 7G), and we have produced polyclonal antibodies against some neuropeptides identified in the transcriptome (Figure 7F and 7G).
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We thank Kevin Olsen, Andrew Gillis, Fraser Simpson and Lena Egger for help with collecting and maintaining specimens, and we thank Lena Egger also for providing Figure 1A. J Spencer Johnston kindly provided the genome size data. Dave Vaughan, Nick Disalvo, Robert Etti and Mark Knowles from Mote Marine Laboratory are gratefully acknowledged for general support at the station. We thank the two anonymous reviewers for careful review of the manuscript and valuable comments. This work was supported by a Leverhulme Trust grant (F/07 134/DA) and a Biotechnology and Biological Sciences Research Council grant (BB/H006966/1) (to MJT), as well as by a Sparkling Science grant from the Austrian Ministry of Science and Research (SPA/02-81) (to BE). MJT is supported by a Royal Society Wolfson Research Merit Award.
The authors declare that they have no competing interests.
BE, FL, KR and MJT designed the experiments. BE, FL, JG, MJT and KR collected adult animals. BE, FL, JG, MJT and KR contributed pictures of adult animals. BE carried out regeneration experiments. KR collected material for transcriptomics and extracted RNA. MJT assembled the transcriptome. BE, BT, FL, JG, KR and MJT analysed the transcriptome. BE fixed larvae for scanning electron microscopy (SEM). GJ and JB made the SEM pictures. BE, GJ and MJT designed neuropeptide antibodies. BE did the immunostaining. BE, BT, FL, JG and KR conducted in situ hybridization trials. BE and FL recorded embryonic development and made larval differential interference contrast pictures. BE, FL and GJ did phototactic experiments and analysis. BE, BT, FL and JG prepared figures. BE and FL wrote the manuscript draft. All authors read, corrected and approved the final manuscript.
Electronic supplementary material
Additional file 4: Trajectories of 2-day-old Maritigrella crozieri larvae swimming towards a light source situated on the left side. Video is Additional file 3, in which a threshold filter was applied using Fiji software (http://www.fiji.sc). Coloured lines and dots were produced using the MTrackJ plugin  for Fiji and correspond to the trajectories of five selected larvae. (AVI 7 MB)
Additional file 5: Figure S1: Alignment of the Maritigrella crozieri ParaHox genes predicted from the transcriptome. M. crozieri’s sequences are highlighted in bold. Sequences were aligned with other representative platyhelminth and metazoan sequences using Clustal Omega software (http://www.clustal.org/omega)  and visualised using Jalview software (http://www.jalview.org)  with colour code ClustalX. Only part of the alignment surrounding the conserved homeodomain is shown. The accession numbers for the sequences included in the alignment are Hs_CDX1 [Swiss-Prot:P47902], Hs_CDX2 [Swiss-Prot:Q99626], Sk_Caudal [Swiss-Prot:B5B3S6], Tc_caudal-1 [Swiss-Prot:D2A357], Tc_caudal-2 [Swiss-Prot:D2A356], Dt_Cdx [Swiss-Prot:Q9GP48], Pd_Cdx [Swiss-Prot:C7SB55], Ch_Cdx [Swiss-Prot:B9V2C5], Hs_PDX1 [Swiss-Prot:P52945], Dr_pdx1 [Swiss-Prot:Q6DC85], Sk_Lox2 [NCBI Refseq:XP_002741152.1], Sp_Xlox [Swiss-Prot:F1CDE7], Pd_Xlox [Swiss-Prot:C7SB60], Gv_Xlox [Swiss-Prot:D9IDZ2], Nv_Xlox/Cdx [Swiss-Prot:C7E1Y2], Hs_GSX1 [Swiss-Prot:Q9H4S2], Hs_GSX2 [Swiss-Prot:Q9BZM3], Dr_gsx1 [Swiss-Prot:Q5QHS3], Dr_gsx2 [Swiss-Prot:Q1RMA3], Pf_Gsx [Swiss-Prot:Q6T4Q6], Dm_Ind [Swiss-Prot:Q7KUL4], Sm_Gsx [NCBI Refseq:XP_002574409.1], Pd_Gsx [Swiss-Prot:C7SB47], Es_Gsx [Swiss-Prot:Q49QY0], Nv_GSX [Swiss-Prot:Q0ZRK1] and Ta_Gsx [Swiss-prot:B5LDS8]. Sequences from Macrostomum lignano were obtained by performing a BLAST analysis of its genome and transcriptome (http://www.macgenome.org/blast/index.html) using the ML100925 and MLRNA100918 assembly, respectively. The identification numbers of the Macrostomum sequences included in the alignment are Ml_Gsx1 [deg2520075501865], Ml_Gsx2 [deg2520075338729], Ml_Cdx [RNA918_2379] and Ml_Xlox [deg2520075475120). The sequences of the contigs corresponding to the Maritigrella cdx and gsx genes can be found in Additional file 1. The abbreviations for the species names in the alignment are as follows: Ct, Clytia hemisphaerica; Dm, Drosophila melanogaster; Dr, Danio rerio; Dt, Discocelis tigrina; Es, Euprymna scolopes; Gv, Gibbula varia; Hs, Homo sapiens; Mc, Maritigrella crozieri; Ml, Macrostomum lignano; Nv, Nematostella vectensis; Pd, Platynereis dumerilii; Pf, Ptychodera flava; Sk, Saccoglossus kowalevskii; Sm, Schistosoma mansoni; Sp, Schmidtea polychroa; Ta, Trichoplax adhaerens; Tc, Tribolium castaneum. (PDF 637 KB)
Additional file 6: Sequence of the contigs from Maritigrella crozieri ’s transcriptome corresponding to the cdx and gsx genes. Mc_Cdx contains a full coding sequence, whereas Mc_Gsx contains only a partial sequence. (RTF 2 KB)
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Lapraz, F., Rawlinson, K.A., Girstmair, J. et al. Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo. EvoDevo 4, 29 (2013). https://doi.org/10.1186/2041-9139-4-29
- Evolutionary and developmental biology
- Polyclad flatworms
- Stem cells